Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0205
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    31   0.088
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    30   0.20 
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    28   1.1  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   1.4  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   3.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   3.3  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   5.8  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   7.7  

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 31.5 bits (68), Expect = 0.088
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = -1

Query: 515 LDGSLVSISSRNKYLLSFLVPSKILNISHKVKNVGLNTENL 393
           L  SLV+  S N Y+L  L+ +KI N    VK VG+ TEN+
Sbjct: 55  LRDSLVTYKSENSYVLKALLNAKIEN----VKPVGVQTENI 91


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
 Frame = +1

Query: 4   HENFHPPPNFSRSFGTPFNKTYRQGPQPFVQQKAYP----QTAFARGASPQRSQSPK--- 162
           H N +PPP   +S  +P      Q   P+     +P    QT FA    PQR+ SP    
Sbjct: 185 HNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPYYYPQRATSPSLKQ 244

Query: 163 -PT--DEHFVKVPVH-HETPKAEPPSRAQKSPQQHNLHRXS 273
            PT    H ++     ++     PP+    SP Q+ L   S
Sbjct: 245 VPTYLGTHVLQQDQSTYDQKVLMPPASYLSSPNQYTLKNVS 285


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 16  HPPPNFSRSFGTPFNKTYRQ 75
           HPPPN+  S G+ FNK + Q
Sbjct: 464 HPPPNYPNS-GSEFNKEHHQ 482


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 247 QQHNLHRXSLLNNTSLRHRRAHSNN 321
           Q   LHR SL N     HR AH +N
Sbjct: 267 QSTGLHRRSLTNYFKFPHRNAHQHN 291


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 190 PVHHETPKAEPPSRAQKSPQQHNLHRXSLLNNTS 291
           PVHH      P  RA K P  +  +  +LLN+ S
Sbjct: 884 PVHHYPFATPPSQRANKYPLNNGANVPALLNSFS 917


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = +1

Query: 4   HENFHPPPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFV 183
           H  +  P N        + ++    P P+V +   P +  A    P  S+SP   D + V
Sbjct: 339 HFPYPQPSNLDAINAKTYFQSSSNSPAPYVYRNNLPPS--ATSFQPSSSRSPS-VDPNTV 395

Query: 184 KVPVHHETPKAEP-PSRAQKSPQQH 255
           K   H   P+  P PS +    Q H
Sbjct: 396 KSAQH--IPRMSPSPSASALKTQSH 418


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 172 EHFVKVPVHHETPKAEPPSRAQKSPQQH 255
           EH    P+HHE  +  PP      P +H
Sbjct: 218 EHMPPPPMHHEPGEHMPPPPMHHEPGEH 245



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 172 EHFVKVPVHHETPKAEPPSRAQKSPQQH 255
           EH    P+HHE  +  PP      P +H
Sbjct: 231 EHMPPPPMHHEPGEHMPPPPMHHEPGEH 258



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 172 EHFVKVPVHHETPKAEPPSRAQKSPQQH 255
           EH    P+HHE  +  PP      P +H
Sbjct: 244 EHMPPPPMHHEPGEHMPPPPMHHEPGEH 271



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 172 EHFVKVPVHHETPKAEPPSRAQKSPQQH 255
           EH    P+HHE  +  PP      P +H
Sbjct: 257 EHMPPPPMHHEPGEHMPPPPMHHEPGEH 284



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 172 EHFVKVPVHHETPKAEPPSRAQKSPQQH 255
           EH    P+HHE  +  PP      P +H
Sbjct: 270 EHMPPPPMHHEPGEHMPPPPMHHEPGEH 297



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 172 EHFVKVPVHHETPKAEPPSRAQKSPQQH 255
           EH    P+HHE  +  PP      P +H
Sbjct: 283 EHMPPPPMHHEPGEHMPPPPMHHEPGEH 310



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 172 EHFVKVPVHHETPKAEPPSRAQKSPQQH 255
           EH    P+HHE  +  PP      P +H
Sbjct: 296 EHMPPPPMHHEPGEHMPPPPMHHEPGEH 323



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 172 EHFVKVPVHHETPKAEPPSRAQKSPQQH 255
           EH    P+HHE  +  PP      P +H
Sbjct: 309 EHMPPPPMHHEPGEHMPPPPMHHEPGEH 336


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 58  NKTYRQGPQPFVQQKAYPQTAF 123
           N+ Y   PQP+  Q  YPQ  +
Sbjct: 93  NRAYGAAPQPYPPQGGYPQQPY 114


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = +1

Query: 82   QPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKS 243
            +PF +      TA ARG  P     P  T    +        P A P S AQ++
Sbjct: 969  KPFPRLATGGSTAAARGPRPVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQQT 1022


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 493 SRQETNIFCLFWCPVKFSTSVI 428
           SR E   FC+ WCP ++    I
Sbjct: 165 SRNEQPAFCVNWCPSRWREQYI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,943
Number of Sequences: 5004
Number of extensions: 36122
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)