Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0205
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1151 + 34937738-34937855,34937959-34939244 35 0.052
03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,349... 34 0.068
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 32 0.36
06_03_1310 + 29238644-29240260 31 0.48
05_03_0039 - 7621613-7622695 31 0.48
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 0.48
03_05_0593 - 25959013-25959789 31 0.84
03_01_0471 + 3629158-3629185,3630027-3630058,3630272-3630344,363... 31 0.84
04_04_1695 + 35433975-35437040 30 1.1
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 29 2.6
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 29 2.6
03_04_0011 + 16398093-16398170,16401321-16401806,16401892-164023... 29 3.4
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 28 4.5
07_03_1157 - 24419157-24419948 28 4.5
06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223... 28 4.5
05_03_0040 - 7646525-7647775 28 4.5
04_03_0904 + 20717005-20718087 28 4.5
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 28 4.5
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 5.9
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 28 5.9
08_02_0061 - 11833894-11834377,11834417-11834499 28 5.9
04_04_1287 - 32390422-32391588,32392472-32392645 28 5.9
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754... 28 5.9
08_02_0593 + 19078264-19078609,19078724-19082256 27 7.8
04_03_0544 - 16970746-16970814,16971295-16971693 27 7.8
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 27 7.8
02_01_0035 - 220036-221419,222050-222801 27 7.8
01_05_0026 - 17315805-17315831,17315930-17316010,17316809-173168... 27 7.8
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 27 7.8
>01_06_1151 + 34937738-34937855,34937959-34939244
Length = 467
Score = 34.7 bits (76), Expect = 0.052
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +1
Query: 67 YRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSP 246
Y G QP V+ + P AF RG+ S+S + + E P+H + P SR + P
Sbjct: 82 YGGGEQPPVRTSSAPYAAFDRGSVRAGSRSGEQSGEERGGSPMHSRVSELRPTSRRTRRP 141
Query: 247 QQHNL 261
++
Sbjct: 142 MSGDM 146
>03_01_0455 +
3487354-3488090,3489172-3489255,3489942-3490554,
3491356-3491583,3492270-3492437,3492828-3494587,
3494667-3494670
Length = 1197
Score = 34.3 bits (75), Expect = 0.068
Identities = 21/77 (27%), Positives = 27/77 (35%)
Frame = +1
Query: 16 HPPPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPV 195
+P P SR+ G P T P P GA P P P+ + P
Sbjct: 4 YPAPTSSRAIGAPIQPTEPHAPLP---------NTGGEGAPPPARTMPPPSSQAATSTPP 54
Query: 196 HHETPKAEPPSRAQKSP 246
TP PP++A P
Sbjct: 55 AAATPLQRPPAQATAQP 71
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 31.9 bits (69), Expect = 0.36
Identities = 22/76 (28%), Positives = 31/76 (40%)
Frame = +1
Query: 46 GTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPP 225
G F +++ F + P T +SP SP P VK + H+ P+ P
Sbjct: 261 GNQFQPGFKRASPSFTRSAHSPPTPHPPPSSPPPPMSPPPP---AVKENLKHK-PEPLKP 316
Query: 226 SRAQKSPQQHNLHRXS 273
S + S HN HR S
Sbjct: 317 SLSHSSMYNHNQHRKS 332
>06_03_1310 + 29238644-29240260
Length = 538
Score = 31.5 bits (68), Expect = 0.48
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +1
Query: 19 PPPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDE-HFVKVPV 195
PP + + S P TY + P+ + P ++ GASP S S PT+ +V P+
Sbjct: 400 PPSSPTPSHLPPPPPTYSESPKSSMPPSTSPPSS--HGASPPSSSSSPPTEHPGYVLPPL 457
Query: 196 HHETPKAEPPSRAQKSP 246
P PP P
Sbjct: 458 TPPPPTTTPPGHHAPVP 474
>05_03_0039 - 7621613-7622695
Length = 360
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 79 PQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSPQ 249
P+P+ + K P+ P+ P+P E K PV H PK EP + P+
Sbjct: 152 PKPYPKPKPEPKPGPKPEPKPEPKPHPEPKPEPKPK-PVPHPEPKPEPKPEPKPHPE 207
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/81 (23%), Positives = 28/81 (34%)
Frame = +1
Query: 4 HENFHPPPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFV 183
H+ + PP + P Q P F Q PQ+ ++P +P+ +E
Sbjct: 335 HQQYQAPP-VPQPQAPPAPPQQYQTPPQFPQYSQPPQSGMVNPSTPLPPAAPQQPEEAMS 393
Query: 184 KVPVHHETPKAEPPSRAQKSP 246
P P PPS P
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPP 414
>03_05_0593 - 25959013-25959789
Length = 258
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 19 PPPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPT 168
PPP+ S + + P+PF+ PQ F GA+ S S PT
Sbjct: 7 PPPSSQSSSSSSSSSPVFPSPRPFMALPHPPQAGFLDGAAEGPSSSMSPT 56
>03_01_0471 +
3629158-3629185,3630027-3630058,3630272-3630344,
3630745-3630969,3631319-3631789,3632286-3633118
Length = 553
Score = 30.7 bits (66), Expect = 0.84
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 133 ASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSPQQHNLHRXSL-LNNTSLRHRRA 309
ASP R S +P+ + ++ TP + P R+ + ++ R ++ L+N S R R +
Sbjct: 336 ASPPRPISRRPSSQSISRIYAASGTPNSPNPIRSFTNSTAMSISRSNVDLSNMSSRPRAS 395
Query: 310 HSNNLH-LNGNKLLRSLKLNNHHP 378
H + H L G+ L + + P
Sbjct: 396 HLASAHSLVGSHLSPPINIRYASP 419
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Frame = +1
Query: 94 QQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPK------AEPPSRAQKSPQQH 255
Q + P AF G + ++Q P P E K HE P+ + P+ A P++
Sbjct: 161 QPDSRPPPAFPHGEAQAQAQPPPPESESKGKTTHDHEPPRVFRSVPVQAPAPAASQPRRA 220
Query: 256 NLH 264
LH
Sbjct: 221 TLH 223
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 29.1 bits (62), Expect = 2.6
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Frame = +1
Query: 1 RHENFHPPPNFSRSFGTPFNKTYRQG-PQPFVQQKAYPQTAFARGASP------QRSQSP 159
RH P P R G Y Q PQP QQ+ + ARGASP Q+ Q P
Sbjct: 9 RHHTEAPDPG-GRGRGRGRAARYAQPQPQPQQQQQQQGRGCRARGASPPPPPQQQQQQQP 67
Query: 160 KPTDEHFVKVPVHHETPKAEPPSRAQKSPQ 249
+ T V V + S + +P+
Sbjct: 68 RSTPTRATTVTVASSSSTTATASSSPLAPE 97
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +1
Query: 7 ENFHPPPNFSRSFGTPF-NKTYRQGPQ---PFVQQKAYPQTAFARGASPQRSQSPKP 165
EN P P+FS + ++R P PF+ P T F G++ Q + P P
Sbjct: 910 ENTTPNPSFSHASPRMMPGSSFRMNPPAPLPFIPSSVTPLTQFPGGSAQQSEKRPPP 966
>03_04_0011 +
16398093-16398170,16401321-16401806,16401892-16402380,
16402810-16403466
Length = 569
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 130 HGQTPFVGMPFAVQKVEVLVYKSC*KA 50
HGQ + G PF +K+E+L K+ KA
Sbjct: 301 HGQDAWEGFPFTAEKMEILAEKAKAKA 327
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +1
Query: 73 QGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSPQQ 252
Q P P + Q +R ++ Q P+ +H VKV + + +PP + +P Q
Sbjct: 404 QFPHPQQHNEVLLQKGTSRTSTTQLINHQAPSLQHAVKVETTQQQQQQQPPKSIKPAPIQ 463
Query: 253 HN 258
+
Sbjct: 464 QS 465
>07_03_1157 - 24419157-24419948
Length = 263
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 139 PQRSQSPKPTDEHFVKVPVHHETPKAE 219
P + PKP + H +VP H + PK E
Sbjct: 226 PVVPELPKPEEPHHPEVPEHEQPPKPE 252
>06_01_0309 -
2233573-2234556,2234670-2234721,2235406-2236391,
2237790-2238050
Length = 760
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 40 SFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAE 219
S +PF++ G P A+P T A+ PQ S S + + +KV H+ +E
Sbjct: 688 SASSPFDRFQCSGSGPV---SAFP-TVSAQNNQPQPSYSSRDNQTNVIKVVPHNSRTASE 743
Query: 220 PPSRAQKSPQ 249
+R +S Q
Sbjct: 744 SAARIFRSIQ 753
>05_03_0040 - 7646525-7647775
Length = 416
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = +1
Query: 64 TYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKS 243
TY + P+P + K P P+ PKP E K P PK EP +
Sbjct: 49 TYEKLPEPEPKPKPKPHPKPTPKPEPKPEPEPKPVPEPEPK-PEPKPEPKPEPKPEPKPY 107
Query: 244 PQ 249
P+
Sbjct: 108 PE 109
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +1
Query: 79 PQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSP 246
P+P + K YP+ P+ PKP + K P PK EP + + P
Sbjct: 230 PKPKPEPKPYPEPKPKPEPKPEPKPEPKPEPKPEPK-PEPKPEPKPEPKPKPEPKP 284
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 79 PQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVK-VPVHHETPKAEPPSRAQKSPQ 249
P+P + K YP+ P+ PKP + K P + PK EP + P+
Sbjct: 98 PEPKPEPKPYPEPKPEPKPEPKPEPEPKPEPKPEPKPEPKPYPEPKPEPKPEPKPEPK 155
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +1
Query: 160 KPTDEHFVKVPVHHETPKAEPPSRAQKSP 246
KP EH K P HHE PK E P + K P
Sbjct: 46 KPPKEH--KPPHHHE-PKPEKPPKEHKPP 71
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 130 HGQTPFVGMPFAVQKVEVLVYKSC*KACQRNVRN*AVDGN 11
HG + G PF+ +K+E+L K+ KA + + + V G+
Sbjct: 320 HGPDAWEGFPFSAEKLEILAEKAKAKAESQTLESLLVTGD 359
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.9 bits (59), Expect = 5.9
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Frame = +1
Query: 34 SRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPK 213
SRS +P R P P + P +A +R + P Q P P+ TP
Sbjct: 147 SRSSASPI----RLSPSPRSMSRTRPSSAASRSSPPFALQPPTPSWRPSTPPSAKTLTPP 202
Query: 214 AEPPSRA------QKSPQQHNLHRXSLLNNTSLRHRRAHSNNLHLNGNKLLRSLKLNNHH 375
PS A ++SP + R S + +L R S + N++ S KL H
Sbjct: 203 RRSPSPASTLTPPRRSPSPAS-RRMSTGSTPALNRTRGPS---PVKTNRISSSPKLQGWH 258
Query: 376 PMIP 387
+P
Sbjct: 259 SNVP 262
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +1
Query: 79 PQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSPQQHN 258
P P QQ YP + P + Q P P+ + H P A PP + Q P H+
Sbjct: 12 PYPPPQQYPYPYGQYPYQYPPPQQQPPPPS-AYLSPSRSFHGYPSA-PPPQPQPQPYAHH 69
>08_02_0061 - 11833894-11834377,11834417-11834499
Length = 188
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 139 PQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQ-KSPQQHNLHRXSLLNNTSLRHRRAHS 315
P PKP+ +VK+P PK + R + P++ + R + L H+ HS
Sbjct: 82 PTSDHHPKPSPPSYVKMP---GRPKGKSRKRKPGEKPKETKMSRVGTIMRCGLCHKTKHS 138
Query: 316 N 318
+
Sbjct: 139 S 139
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/70 (20%), Positives = 32/70 (45%)
Frame = +1
Query: 85 PFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSPQQHNLH 264
P ++ +P A ++PQ + SP ++HF+K+ + E + + + + ++
Sbjct: 244 PATTEEPHPYNTTASESNPQENSSP---EQHFIKLRTNREDDEPQDKTTGDANDNSNDAL 300
Query: 265 RXSLLNNTSL 294
S L + L
Sbjct: 301 EGSHLGKSEL 310
>04_04_1161 +
31374240-31374403,31374495-31374812,31375347-31375493,
31375674-31375754,31375799-31375886,31375999-31376176,
31376705-31376794,31376795-31376866,31377247-31377257
Length = 382
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 503 LVSISSRNKYLLSFLVPSKILNISHKVKNVGLNTENLCYGI 381
L S+++ YLLSFL+P I ++ +GL++ YGI
Sbjct: 335 LSSLATLGGYLLSFLIPENIAGVTG--APIGLDSPANSYGI 373
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 217 EPPSRAQKSPQQHNLHRXSLLNNTSLRHRR 306
+PP RA P + LHR N+ S H++
Sbjct: 675 KPPVRASHKPPLNTLHRPFSTNSASFGHKK 704
>04_03_0544 - 16970746-16970814,16971295-16971693
Length = 155
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 19 PPPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDE 174
PPP+ + RQ + A PQ +RG P+ +Q + DE
Sbjct: 84 PPPDLAEGEAASSRGRRRQLQRTTAATAAVPQRRISRGRRPEATQGRRTKDE 135
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/68 (30%), Positives = 26/68 (38%)
Frame = +1
Query: 19 PPPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVH 198
PPP P K Q P P ++K P A P + +P+P E K P
Sbjct: 174 PPPPAPEPEPEPPKKEEPQPPPPKEEEKPEPPPAVIIVEPP--APAPEPEPEPPKKEPPP 231
Query: 199 HETPKAEP 222
PK EP
Sbjct: 232 PPPPKQEP 239
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.5 bits (58), Expect = 7.8
Identities = 25/87 (28%), Positives = 35/87 (40%)
Frame = +1
Query: 4 HENFHPPPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFV 183
H + HPPP F G PF QQ + A A G P ++H
Sbjct: 67 HHHHHPPPQMPPHLAH-FGGA---GGIPFTQQLLHQ--AAAAGHHPHLQLFH---EQH-- 115
Query: 184 KVPVHHETPKAEPPSRAQKSPQQHNLH 264
HH+ + +PP A+ +PQ H+ H
Sbjct: 116 ----HHQKHQQQPPPPARWAPQHHHHH 138
>01_05_0026 -
17315805-17315831,17315930-17316010,17316809-17316871,
17317542-17317620,17317711-17317928,17319688-17319879
Length = 219
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 139 PQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSPQQHNLHRXSLLNNTSLRHRRAHS 315
P R+ P +H + +H+ PP PQ H+ SL ++ L H R ++
Sbjct: 14 PYRTMVLSPQPDHLNALQYNHQQQPQPPPQATPPPPQHHH---ASLASHFHLLHCRCNA 69
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 127 RGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSPQQHN 258
R A+ SQ+P P H HH P P R+ +P N
Sbjct: 44 RNAAHPPSQAPGPAARHAPGPARHHGAPAPHPGRRSPPAPAPAN 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,986,353
Number of Sequences: 37544
Number of extensions: 249206
Number of successful extensions: 959
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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