Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0205
(563 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03) 38 0.004
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 37 0.013
SB_21967| Best HMM Match : BAG (HMM E-Value=1.7e-18) 34 0.070
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_34528| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0) 30 1.1
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05) 29 2.6
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 2.6
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 29 3.5
SB_8542| Best HMM Match : PT (HMM E-Value=4) 28 4.6
SB_8173| Best HMM Match : GreA_GreB_N (HMM E-Value=0.27) 28 4.6
SB_334| Best HMM Match : WD40 (HMM E-Value=1.6) 28 4.6
SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 28 4.6
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027) 28 4.6
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 28 6.1
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 28 6.1
SB_41879| Best HMM Match : DUF1658 (HMM E-Value=7) 27 8.0
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 27 8.0
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 27 8.0
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 27 8.0
>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
Length = 1832
Score = 38.3 bits (85), Expect = 0.004
Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +1
Query: 1 RHENFHPPPNFSRSFGTPFNKTYRQGP-QPFVQQKAYPQTAFARGASPQRSQSPKPTDEH 177
RH + P + S ++ +PF T + P QP V Q PQ FA SPQRS P
Sbjct: 409 RHSHSSSPTS-SSTYPSPFGST--ESPFQPRVLQNISPQRQFA---SPQRSLGASPVSHR 462
Query: 178 FVKVPVHHETPKAEPPSR--AQKSPQQ 252
V H PP R +QKS Q
Sbjct: 463 HTPVDKHTSPQHLSPPIRPSSQKSSPQ 489
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/71 (22%), Positives = 32/71 (45%)
Frame = +1
Query: 196 HHETPKAEPPSRAQKSPQQHNLHRXSLLNNTSLRHRRAHSNNLHLNGNKLLRSLKLNNHH 375
HH+ + + QK QH+ H N H++ + + H + + + + H+
Sbjct: 571 HHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHRHGHN 630
Query: 376 PMIP*HKFSVF 408
P++P H F +F
Sbjct: 631 PLLPSHSFIMF 641
>SB_21967| Best HMM Match : BAG (HMM E-Value=1.7e-18)
Length = 336
Score = 34.3 bits (75), Expect = 0.070
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +1
Query: 454 GTKKDKRYLFLDEMLTRDPSSLVNIETDG 540
G K DK YLFL EML R +L IET G
Sbjct: 281 GKKTDKEYLFLSEMLLRGILTLDEIETQG 309
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 31.1 bits (67), Expect = 0.65
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +1
Query: 10 NFHPPPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKV 189
++ PPP SRS F +Y + + YP ++ G SQ P D+ F +
Sbjct: 675 SYRPPPAVSRSPYAGFPPSYPRTDSTTPRTGFYPASSSGFGYQQPSSQYVHP-DDPFGAI 733
Query: 190 PVHHETPKAEPP 225
+ TP PP
Sbjct: 734 TGRYATPTVTPP 745
>SB_34528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 155 DCDLWGEAPRANAVCGYAFCCTKG*GPC 72
DC +W PR NA Y CC G C
Sbjct: 15 DCSIWNIKPRENAKTFYCKCCYHVSGEC 42
>SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 486
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 387 ITQILSIQTDVLNLMTDVENFTGHQKRQKIFVS*RDAHKGPIKFSQYRNRRQGKH 551
I I + T L + V NF KR+++ S A G + YR+ + G+H
Sbjct: 398 ICAISGVLTIALPVPVIVSNFNYFYKREQLSSSMEAAENGESSYGSYRDEKDGEH 452
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 454 GTKKDKRYLFLDEMLTRDPSSLVNIETDGKGNI 552
G + D+ YL LDE LTR L ++T+G ++
Sbjct: 772 GRRGDREYLHLDEKLTRCILELDKVQTEGMEDV 804
>SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)
Length = 720
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 127 RGASPQRSQSPKPTDEHFVKVPVHHETPK-----AEPPSRAQKSPQQHNLHRXSLLNNTS 291
R S RS PKP D H K +HH+ K PSR +KS + L++ ++T
Sbjct: 104 RSRSNYRSDIPKPRDNH-DKTFLHHKHHKHMGTSHRIPSRERKSHGKKRLNKHKKASHTR 162
Query: 292 LRHRRAHSNNLH 327
R+ +S H
Sbjct: 163 -RNNHKNSRRTH 173
>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1252
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 202 ETPKAEPPSRAQKSPQQHNLHRXSLL---NNTSLRHRRAHSNNLHLNG 336
E PK P A+ ++ +LHR + N+TS R RRA+ + NG
Sbjct: 553 ERPKCVPYVTAEFKAEEFDLHRKFTVGQGNSTSARIRRANGGKNYYNG 600
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 19 PPPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSP 159
PPP++ + +Y G QP+ Q+AYP GASPQ P
Sbjct: 130 PPPSYDSTMQQ--GGSYPPGQQPYPGQQAYPGQP---GASPQGQPYP 171
>SB_8542| Best HMM Match : PT (HMM E-Value=4)
Length = 650
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +1
Query: 16 HPPPNFSRSFGTPFNKTYRQG-PQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKV- 189
+P P + S G P K Y G QP PQ+ + +PQ S P D H +
Sbjct: 585 NPQPKYYPS-GNPQPKYYPSGNQQPRYYTSGNPQSRYYPSGNPQLSPGIAPVDIHSPGIA 643
Query: 190 PVHHETP 210
PV +P
Sbjct: 644 PVDIHSP 650
>SB_8173| Best HMM Match : GreA_GreB_N (HMM E-Value=0.27)
Length = 488
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 208 PKAEPPSRAQKSPQQHNLHRXSLLNNTSLRHRRAHSNNLHLNGN 339
P PP+ AQK+ QH + R L + S + H L G+
Sbjct: 423 PSPSPPA-AQKNEHQHRIEREEFLQSISPTSQMQHQPGQRLGGD 465
>SB_334| Best HMM Match : WD40 (HMM E-Value=1.6)
Length = 327
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = -1
Query: 560 PVGMFPLPSVSILTKLDGSLVSISSRNKYLLSFLVPSKILNISHKVKNVGLNTENL 393
P G F + S+L+ +D V+ S N + F PS ++ ++H V++VGL++++L
Sbjct: 64 PTG-FRIIKTSVLSDVDQEHVT-KSPNFIVTEF--PSVLVPVNHAVRHVGLSSDDL 115
>SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 235 QKSPQQHNLHRXSLLNNTSLRHRRAHSNNLHLNGN 339
Q+ QQHNL S +NN + ++NN + N N
Sbjct: 56 QQQQQQHNLSNSSDINNNNTTTSNNNNNNNNNNNN 90
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/69 (31%), Positives = 28/69 (40%)
Frame = +1
Query: 22 PPNFSRSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHH 201
PP F+ S P +Y+ G + P TA+ G Q SP PT H
Sbjct: 949 PPTFNFSVPKPNLPSYKFGSPA----RDLPSTAYKFGTPKQELHSPTPT----------H 994
Query: 202 ETPKAEPPS 228
TPK +P S
Sbjct: 995 STPKQKPSS 1003
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = +1
Query: 16 HPPPNFSRSFGTP--FNKTYRQGPQPFVQ-QKAYPQTAFARGASPQRSQSPKPTDEHFVK 186
HPPP + RS P + Y+Q P P Q Q+ +G PQ +++ + +
Sbjct: 509 HPPPPYQRSASYPGYSPEQYQQVPPPHSQMQQPNQPPNMMKGPRPQMTRNQYLQEYMMKR 568
Query: 187 VPVHHETPKAEPPSRAQKSPQQ 252
+ + + P + P Q
Sbjct: 569 AQMQQHYKQQQQPYMPNQMPNQ 590
>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
Length = 292
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 235 QKSPQQHNLHRXSLLNNTSLRHRRAHSNNLHLNGNKLLRSLKLNNH 372
+KS +N +R S NN + + +NN + N N + S NNH
Sbjct: 212 RKSNDNNNHYRNSNDNNNNHFRKSNDNNNHYRNNNSNINSSDSNNH 257
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = +1
Query: 67 YRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSP 246
++Q P P + + A PQ + P T P+HH P PP Q +
Sbjct: 1107 HQQSPLPMPRPIPHAPHLATGQAVPQWASPPIDTVSSITTSPIHHLAP---PPGAIQSAL 1163
Query: 247 QQH 255
Q H
Sbjct: 1164 QAH 1166
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +1
Query: 91 VQQKAYPQTAFARGASPQRSQ---SPKPTDEHFVKVPVHHETPKAEPPSRAQKSPQQHNL 261
+Q + P FA P + P+PT V + ETPK PP K P+ L
Sbjct: 591 LQAETSPSLEFAPDVEPNGTPYQTRPQPTQASRTDVKRYQETPKRAPPPTFPK-PKMPGL 649
Query: 262 HR 267
R
Sbjct: 650 RR 651
>SB_41879| Best HMM Match : DUF1658 (HMM E-Value=7)
Length = 180
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 109 PQTAFARGASPQRSQSPKPTDE---HFVKVPVHHETPKAEPPSRAQKSPQ-QHNLHRXSL 276
P+ ++ +SP++ Q+ K TDE + H TPK+ P ++SP+ H++ R
Sbjct: 93 PKPTYSLRSSPRKGQAIK-TDESPSRNARQKGHKSTPKSSPGVETRRSPRGAHSVPRVEE 151
Query: 277 LNNTSLRHRR 306
+ + R R
Sbjct: 152 TTSPNQRKGR 161
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +1
Query: 37 RSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVK 186
RS G+ N T Q + V+Q+ RG S SQ P PT EH VK
Sbjct: 35 RSRGSLTNGTAPQN-EAAVEQQTGSSGRNTRGKSADTSQ-PSPTSEHHVK 82
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +1
Query: 37 RSFGTPFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVK 186
RS G+ N T Q + V+Q+ RG S SQ P PT EH VK
Sbjct: 75 RSRGSLTNGTAPQN-EAAVEQQTGSSGRNTRGKSADTSQ-PSPTSEHHVK 122
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 27.5 bits (58), Expect = 8.0
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Frame = +1
Query: 10 NFHPPPNFSRSFGTPFNKTYRQGP--QPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFV 183
++ PP RS P Y Q P + ++ YP R +SP S P+ +
Sbjct: 660 DYLPPGQSGRSM-RPSMPQYPQAPPYNSYQSRQQYPPMPPYRPSSPHVQSSASPSMQRPQ 718
Query: 184 KVPVHHETPKAEPPSRAQKSPQQHNLH 264
V P+ P QQH+ H
Sbjct: 719 MVQSQGVLPQQLSPKPKYNQSQQHSGH 745
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,064
Number of Sequences: 59808
Number of extensions: 295605
Number of successful extensions: 1720
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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