Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0205
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.13 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = +1

Query: 73  QGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSRAQKSPQQ 252
           Q  QP + Q++   ++ A G  P   QSP+         P     P   P +   ++P Q
Sbjct: 3   QQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQ 62


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 49  TPFNKTYRQGPQPFVQQKAYPQTAFARGASP 141
           TPF +TY++   P+VQ   + Q  F  G +P
Sbjct: 229 TPFFQTYKKQRYPWVQLAGH-QGNFRAGPTP 258


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 49  TPFNKTYRQGPQPFVQQKAYPQTAFARGASP 141
           TPF +TY++   P+VQ   + Q  F  G +P
Sbjct: 144 TPFFQTYKKQRYPWVQLAGH-QGNFRAGPTP 173


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 49  TPFNKTYRQGPQPFVQQKAYPQTAFARGASP 141
           TPF +TY++   P+VQ   + Q  F  G +P
Sbjct: 463 TPFFQTYKKQRYPWVQLAGH-QGNFRAGPTP 492


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 140 GEAPRANAVCGYAFCCTK 87
           GE P     CG  F C+K
Sbjct: 200 GEKPYVCKACGKGFTCSK 217


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +1

Query: 52  PFNKTYRQGPQPFVQQKAYPQTAFARGASPQRSQSPKPTDEHFVKVPVHHETPKAEPPSR 231
           P  KT+ +GP+ +     +      +   P+     K  DE   +   + ++ K  P S 
Sbjct: 52  PSFKTFDKGPKNYTTPVNFVAGGIQQAGKPKEETDDKDDDESDNE---NIKSQKEFPNSS 108

Query: 232 AQKSPQQHNLH-RXSLLNNT 288
           +    + +++H R S   NT
Sbjct: 109 SSDDERPNSIHQRASFSLNT 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,251
Number of Sequences: 438
Number of extensions: 2972
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)