Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0204
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.22 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.88 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -2

Query: 233  TAATTMGQLFPKWRIDINPTKSTAVLFKRGRPPNTTL---SIPLPTRRVNTPAPAV 75
            TAATT+G+  P  ++ ++P+ S            TT     + LP   V  P P +
Sbjct: 1283 TAATTIGEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVI 1338


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -3

Query: 196 GASTSTPRKAQRCSSKGVALRTPR*ASPSRLGASTPPPPPFAQSRCSTSPY 44
           GA+   P+  +R +++   + TPR        A+T   P + ++     PY
Sbjct: 31  GAAVQVPQGGRRRAARPGVVTTPRWGCARASSATTMGGPRYGRAAAQGMPY 81


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 175 RKAQRCSSKGVALRTPR*ASPSRLGASTPPPPP 77
           R+  + S+K   L +    SP+   ++TP PPP
Sbjct: 201 RENGKSSAKRKQLVSEHPDSPNSKKSATPSPPP 233


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 546 NSNLYGVRTAPLR 508
           N  LYG R  PLR
Sbjct: 52  NRELYGTRALPLR 64


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 100 ASTPPPPPFAQSRCST 53
           A  PPPPP  +S   T
Sbjct: 730 APPPPPPPRVESFAET 745


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,023
Number of Sequences: 336
Number of extensions: 3366
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)