Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0204
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.53 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    29   0.53 
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   2.1  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    27   2.1  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.8  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   2.8  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   3.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   3.7  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   3.7  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    26   4.9  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    26   4.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.5  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   6.5  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   6.5  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   8.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 130  PR*ASPSRLGASTPPPPPFA 71
            P+ A+P ++ A TPPPPP +
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMS 1713


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 24  FDLRGPRYGLVEHRDWANGGGGGVDAPSREGD 119
           F+L    Y L E  +W  GG  GV AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 327 PGLRRPIWRSSPMTPPSTTRVGRRLASSTTSDRSYHHGTVVPE 199
           PG R+ ++          T+V R LA    S+ +YHHG V  E
Sbjct: 754 PGQRKVVYYCFKRNLVHETKVSR-LAGYVASETAYHHGEVSME 795


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 370 LPVLIA*RGYFSFGPRSPETHLALFADDTAIYYSGRKKACFI 245
           L +L+A  GY SFG  +    +A++ D+T+I+  G K A  +
Sbjct: 251 LYLLVAITGYLSFGSLASGNIIAMY-DNTSIWIIGGKLAIVV 291


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 215 GQLFPKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTPAPAV 75
           G  FP     INPT   ++     + P+TTL  P  ++ + T  P+V
Sbjct: 390 GSSFPDGFKPINPTSFPSLTSSTKKIPSTTL--PTSSKMITTTTPSV 434


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 140 PPNTTLSIPLPTRRVNTPAPAVRPITMFDQPIPWAPKVKYLGVTS 6
           PP  + + P PT   NTPA      T+    IP  P V  +G T+
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGATT 249


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 348 EAISASAPGLRRPIWRSSP--MTPPSTTRVGRRLASSTTSDRSYHHGTVVP 202
           ++++ SA   ++P + S+P  +T  S T   +   SS++S  S H   +VP
Sbjct: 176 DSVTPSASLYKQPSFNSNPAPITTSSATHTSQFSTSSSSSVNSVHTPVMVP 226


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -1

Query: 339 SASAPGLRRPIWRSSPMTPPSTTRVGRRLASSTTSDRSYHHGTVV-PEMAHRHQPHE 172
           SA+AP    P   + P  PP    V  + A +   D  Y  G  V PE+   + P +
Sbjct: 175 SAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQ 231


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 42  RYGLVEHRDWANGGGGGVDAPSREGD 119
           +Y L+E +DW  GG  G+  P+ + +
Sbjct: 193 KYPLLEGKDWKIGGSFGIMPPNSDAE 218


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -1

Query: 333 SAPGLRRPIWRSSPMTPPSTTRVGRRLAS--STTSDRSYHH-GTVVPEMAHRHQPHEKHS 163
           +AP L  P     P T PSTT +   L +   T S RS  H  ++ PE       H   S
Sbjct: 121 AAPQLNSPSHSYEPTTFPSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPPS 180


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex
          subunit Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 97 STPPPPPFAQSRCSTSPYRGPRRSNI 20
          +T PPPP  + +  T   +GPR + I
Sbjct: 22 ATGPPPPIPKIKIKTREPKGPRLTKI 47


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 297 SPMTPPSTTRVGRRLASSTTSDRSYHHGTV 208
           +P T P  T+ GR+   +    R++ HGT+
Sbjct: 789 APFTLPRVTKNGRQEIGNMMCRRAFEHGTL 818


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 134 NTTLSIPLPTRRVNTPAPAVRP 69
           N T S PLPT   N P P   P
Sbjct: 172 NYTASSPLPTASANAPLPVPPP 193



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = -2

Query: 203 PKWRIDINPTKSTAVLFKRGRP--PNTTLSIPLPTRRVNTPAPAVRPITMFDQPIP 42
           P +     P K  A L  RG P  P+   S P    +   P P VRP  M   P P
Sbjct: 100 PSYSQPSQPPKEPA-LPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPP 154


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -3

Query: 241 DFRPQLPPWDSCSRNGASTSTPRKAQRCSSKGVALRTPR*ASPSRLGAS 95
           D  P LPP  S S     +S+ R+  +  S  +    P   SPS L  S
Sbjct: 458 DTVPDLPPLGSLSSRPKPSSSSRRRSQSLSAMLKTSNPYMPSPSLLSGS 506


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 170 STAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRP 69
           ST +L K+ RP       PLP    + P+  VRP
Sbjct: 382 STGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 215 GQLFPKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 111
           G  F  W+    P+ S  +L ++G PP + LS  L
Sbjct: 257 GFKFQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 329 AEAEIASLGYQHR*EKKKSYILAGSIWRL 415
           AE   AS GY  R +K K+   A S W++
Sbjct: 330 AEETFASCGYLKRYQKTKTKTRAKSTWKI 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,925
Number of Sequences: 5004
Number of extensions: 55164
Number of successful extensions: 196
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)