Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0204
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 31 0.56
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 31 0.97
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 31 0.97
SB_2029| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 30 1.7
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_51724| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_37346| Best HMM Match : Extensin_2 (HMM E-Value=0.62) 29 3.9
SB_20395| Best HMM Match : Extensin_2 (HMM E-Value=0.019) 29 3.9
SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8) 28 5.2
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31) 28 5.2
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) 28 5.2
SB_20856| Best HMM Match : Transposase_11 (HMM E-Value=2.3) 28 5.2
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 28 5.2
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28) 28 6.9
SB_39596| Best HMM Match : TTL (HMM E-Value=0) 28 6.9
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_33430| Best HMM Match : RVT_1 (HMM E-Value=1.3e-26) 28 6.9
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_28387| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 28 6.9
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06) 28 6.9
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 28 6.9
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_6920| Best HMM Match : RVT_1 (HMM E-Value=2.7e-06) 28 6.9
SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031) 28 6.9
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_47528| Best HMM Match : RVT_1 (HMM E-Value=9.9e-16) 28 6.9
SB_43394| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_31165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_16359| Best HMM Match : RVT_1 (HMM E-Value=0.00049) 28 6.9
SB_9990| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84) 27 9.1
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2) 27 9.1
SB_15551| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_52277| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 24 9.7
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 115 PSRLGASTPPPPPFAQSRCSTSPYRG 38
P+R+G + PPPPP S+ P RG
Sbjct: 319 PARMGTAPPPPPPSRSSQRPPPPSRG 344
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 31.1 bits (67), Expect = 0.74
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -3
Query: 244 DDFRPQLPPWDSCSRNGASTSTPRKAQRCSSKGVA-LRTPR*ASPSRLGASTPPPPPFAQ 68
D P PP R S S PR+ +R S +R+ P R ASTPP P A+
Sbjct: 911 DSPTPSPPP--RRRRKSPSPSPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPPSPRRAR 968
Query: 67 SRCSTSPYRGPRRSN 23
+ ++ + ++SN
Sbjct: 969 RKVASPEEQDRQKSN 983
Score = 31.1 bits (67), Expect = 0.74
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = -3
Query: 235 RPQLPPWDSCSRNGASTSTPRKAQRCSSKGVALRTPR*ASPSRLGASTPPPP---PFAQS 65
RP+ P S+S PR+++ + RTP SR +P PP P +S
Sbjct: 1044 RPRKRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRSRGSRRSPSPPKREPRRRS 1103
Query: 64 RCSTSPYRGPRRSNI*ASPR 5
++ P R R+ ++ SP+
Sbjct: 1104 PSASPPRREARKRSLSRSPK 1123
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -1
Query: 93 HPR--PRRSPNHDVRPAHTVGPEG 28
HPR P RS + D+RP H +GP G
Sbjct: 288 HPRMDPPRSMSSDIRPMHDMGPRG 311
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 30.7 bits (66), Expect = 0.97
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -2
Query: 191 IDINPTKSTAVL---FKRGRPPNTTLSIPLPTRRVNTPAPAVRPITMFDQPIP 42
ID P S AV R R N+T +P TRRV +P AVRP + Q P
Sbjct: 483 IDSKPRPSPAVREAEMGRSRRDNSTSPLPRQTRRV-SPTQAVRPSSTQGQSAP 534
>SB_2029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 150 FEEHRCAFRG-VDVDAPFREQLSHGGSCGLKSSMKQAFF 263
++E R F G +++DA R L+HGGS ++ ++++ +
Sbjct: 30 YKELRGLFEGDIEIDASTRHALTHGGSIDVRDALRRPIY 68
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 212 QLFPKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRPITMFDQPIPWAP 33
+L P + + P K+ R P+ S+P+PT R N P P +PI + IP P
Sbjct: 67 KLRPPTVLIVRPLKTGTT--PRKNIPDQERSLPIPTPRRNIPYPQPKPIPTPRKNIPNQP 124
Query: 32 K 30
+
Sbjct: 125 Q 125
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 232 PQLPPWDSCSRNGASTSTPRKAQRCSSKGVALRTPR*ASPSRLGAST-PPPPPFAQSRCS 56
P P S++ PR+ QR + T + S LG+S PPPP+ SR S
Sbjct: 719 PGFPQQQQPSQSQQQQFFPRQ-QRMMTTTAHSPTAQSPSADSLGSSVRSPPPPYPGSRTS 777
Query: 55 TSPYRG 38
+P+ G
Sbjct: 778 GNPHMG 783
>SB_51724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 115 PSRLGASTPPPPPFAQSRC 59
P+ LGAS PPPP A +C
Sbjct: 21 PTPLGASAPPPPKSADRKC 39
>SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 349 RGYFSFGPRSPETHLALFADDTAIYYSGRKKACFI--DDFRPQLPPW 215
RGY + P +HL LF+D+ Y SG K+ FI DD R L W
Sbjct: 595 RGYDTAADEYP-SHLNLFSDEVGTYSSG-KQVGFIRNDDHRGVLVCW 639
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = -3
Query: 232 PQLPPWDSCSRNGASTS-TPRKAQRCSS----KGVALRTP-R*ASPSRLGASTPPPPPFA 71
P LPP + S RK R +S + + L++P R PS + A PPPPP A
Sbjct: 797 PHLPPAPNISAEPPPPPPVARKPSRSNSTSSQRSLELQSPSREEGPSLITAEPPPPPPVA 856
Query: 70 Q 68
+
Sbjct: 857 R 857
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -3
Query: 211 SCSRNGASTSTPRKAQRCSSKGVALRTPR*ASPSRLGASTPPPPPFAQSRCSTSP 47
S S + +S T KA+ CS+ P S A PPPPP + + P
Sbjct: 544 SPSTSTSSVGTLNKAEHCSASADLPLPPPEFSDLESSAPIPPPPPQMNNTSAPPP 598
>SB_37346| Best HMM Match : Extensin_2 (HMM E-Value=0.62)
Length = 331
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = -3
Query: 235 RPQLPPWDSCSRNGASTSTPRKAQRCSSKGVALRTPR*ASPSRLGASTPPPPPFAQSRCS 56
+ Q+PPW ST +C SK P +P + T P P F R
Sbjct: 58 KSQIPPWTRARSPVDSTRAKSPRGQCQSK-----VPPWTAPEQDPPWTVPKPDFLIDRAK 112
Query: 55 TSPYRGPRRSNI 20
+ G R+S I
Sbjct: 113 ARYHGGKRQSQI 124
>SB_20395| Best HMM Match : Extensin_2 (HMM E-Value=0.019)
Length = 348
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = -3
Query: 235 RPQLPPWDSCSRNGASTSTPRKAQRCSSKGVALRTPR*ASPSRLGASTPPPPPFAQSRCS 56
+ Q+PPW ST +C SK P +P + T P P F R
Sbjct: 215 KSQIPPWTRARSPVDSTRAKSPRGQCQSK-----VPPWTAPEQDPPWTVPKPDFLIDRAK 269
Query: 55 TSPYRGPRRSNI 20
+ G R+S I
Sbjct: 270 ARYHGGKRQSQI 281
>SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)
Length = 672
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = -3
Query: 205 SRNGASTSTPRKAQRCSSKGVALRTPR*ASPSRLGASTPPPPP 77
SR+ S + P K +R S +R PR SPSRLG ST P P
Sbjct: 514 SRDFGSFTRP-KPRRSKSP---VRRPRSVSPSRLGNSTVEPLP 552
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 214 DSCSRNGASTSTP-RKAQRCSSKGVALRTPR*ASPSRLGASTPPPPPFAQS 65
+SCS+N + + +C S G L+ + + ASTPPPPP S
Sbjct: 616 ESCSQNDCLSDLECDEGSKCCSDGCKLKCVQ----LKRQASTPPPPPTTSS 662
>SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)
Length = 646
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 138 RATPFEEHRCAFRGVDVDAPFREQLSHG 221
+ + F HRC F G+D++ E S+G
Sbjct: 208 KCSSFSSHRCPFPGIDIEGADDEMESNG 235
>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
Length = 361
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 140 PPNTTLSIPLPTRRVNTPA 84
PPNT +P PT+ ++TPA
Sbjct: 337 PPNTVHPLPFPTKYLSTPA 355
>SB_20856| Best HMM Match : Transposase_11 (HMM E-Value=2.3)
Length = 449
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 349 RGYFSFGPRSPETHLALFADDTAIYYSGRK 260
RGY + SP +HL LF+D+ Y+SG++
Sbjct: 230 RGYDTARDESP-SHLNLFSDEGGTYHSGKQ 258
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 193 ASTSTPRKAQRCSSKGVAL--RTPR*ASPSRLGASTPPPPPFAQSRCSTSPYRG 38
A+ TP ++R SS + TPR + SR G PP Q +C+T RG
Sbjct: 393 AAAGTPAGSRRSSSSSRSSLPSTPRSRTSSR-GQEVVSKPPRPQKKCTTRKSRG 445
>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
Length = 434
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 219 PMSVNTELSMYADDHQIYHCGR 240
>SB_39596| Best HMM Match : TTL (HMM E-Value=0)
Length = 808
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 91 PMSVNTELSMYADDHQIYHCGR 112
>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1810
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 179 PTKSTAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRPIT 63
PT ST +L + + S+PLP + + P +RP T
Sbjct: 479 PTSSTGILSTQHACDAPSESVPLPQHQYSLPDERLRPFT 517
>SB_33430| Best HMM Match : RVT_1 (HMM E-Value=1.3e-26)
Length = 288
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 172 PMSVNTELSMYADDHQIYHCGR 193
>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2271
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 2154 PMSVNTELSMYADDHQIYHCGR 2175
>SB_28387| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 220
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 172 PMSVNTELSMYADDHQIYHCGR 193
>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
Length = 1826
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/70 (24%), Positives = 28/70 (40%)
Frame = -3
Query: 229 QLPPWDSCSRNGASTSTPRKAQRCSSKGVALRTPR*ASPSRLGASTPPPPPFAQSRCSTS 50
++PP + S + T TP + +R G R S + PPP P + +
Sbjct: 1465 EIPPTEDPSTDAVPTDTPSRKKRAIPAGCKDHNGR-MKRSCVFIPPPPPKPTTPPKHGSG 1523
Query: 49 PYRGPRRSNI 20
+ G R N+
Sbjct: 1524 GFAGYRAPNL 1533
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 140 PPNTTLSIPLPTRRVNTPAPAV 75
PPNTT P T R+ T AP V
Sbjct: 336 PPNTTQQPPATTTRMKTDAPGV 357
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 140 PPNTTLSIPLPTRRVNTPAPAVRPITMFDQPIPWAP 33
P NT + P + NTP P P + P P P
Sbjct: 60 PSNTPQQLTTPPHQSNTPRPLTPPSRQSNNPRPHTP 95
>SB_6920| Best HMM Match : RVT_1 (HMM E-Value=2.7e-06)
Length = 250
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 134 PMSVNTELSMYADDHQIYHCGR 155
>SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)
Length = 546
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 490 PMSVNTELSMYADDHQIYHCGR 511
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 882 PMSVNTELSMYADDHQIYHCGR 903
>SB_47528| Best HMM Match : RVT_1 (HMM E-Value=9.9e-16)
Length = 228
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 172 PMSVNTELSMYADDHQIYHCGR 193
>SB_43394| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 37 PMSVNTELSMYADDHQIYHCGR 58
>SB_31165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 34 PMSVNTELSMYADDHQIYHCGR 55
>SB_16359| Best HMM Match : RVT_1 (HMM E-Value=0.00049)
Length = 220
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 172 PMSVNTELSMYADDHQIYHCGR 193
>SB_9990| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 328 PRSPETHLALFADDTAIYYSGR 263
P S T L+++ADD IY+ GR
Sbjct: 172 PMSVNTELSMYADDHQIYHCGR 193
>SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)
Length = 451
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -1
Query: 339 SASAPGLRRPI-WRSSPMTPPSTTRVGRRLASSTTSDRSYHH 217
S + P R+ + WRS PM P + G L S SY H
Sbjct: 216 SCANPKCRKEMSWRSQPMMPGTKVAAGNFLLSYAILVASYEH 257
>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
Length = 323
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 249 SSTTSDRSYHHGTVVPEMAHRHQPHEK 169
SS++S S+HH + HRH P +
Sbjct: 96 SSSSSSSSHHHHQQQQQQQHRHHPRHR 122
>SB_15551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 91 PPPPPFAQSRCSTSPYRGPR 32
P P P + R +TSPYR P+
Sbjct: 101 PYPTPTSPQRATTSPYRAPK 120
>SB_52277| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 91 PPPPPFAQSRCSTSPYRGPR 32
P P P + R +TSPYR P+
Sbjct: 75 PYPTPTSPQRATTSPYRAPK 94
>SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1041
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = -1
Query: 306 WRSSPMTPPSTTRVGRRLASSTTSDRSYHHGTVVPEMAHRHQPHEKHSGALQK 148
W+ + T + + A +TT+ R H + Q H+KHS +++
Sbjct: 144 WQKTRQTIGKKKKHDKHSAKNTTNTRQKHDKHSAKNTTNTRQKHDKHSAKIRQ 196
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 23.8 bits (49), Expect(2) = 9.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 103 GASTPPPPPF 74
GA PPPPPF
Sbjct: 209 GAPPPPPPPF 218
Score = 21.8 bits (44), Expect(2) = 9.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -3
Query: 115 PSRLGASTPPPPP 77
PS + PPPPP
Sbjct: 188 PSPMAGMPPPPPP 200
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,340,770
Number of Sequences: 59808
Number of extensions: 461221
Number of successful extensions: 2200
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2170
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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