Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0204
         (612 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   0.36 
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    27   0.63 
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   1.9  
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          25   1.9  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    25   1.9  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    25   1.9  
AY344835-1|AAR05806.1|  334|Anopheles gambiae ICHIT protein.           24   3.4  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   3.4  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    24   3.4  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   3.4  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   4.4  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   5.9  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   7.8  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 0.36
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 75  NGGGGGVDAPSREGDAQRGVRRATPFEEHRCAFRGVDVDAPFRE 206
           NGGGGG     REG +Q    R+ P ++H     G    AP  E
Sbjct: 528 NGGGGGGGGGGREG-SQEWNSRSRPPQQHSMLRTGPKSLAPDHE 570


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 26.6 bits (56), Expect = 0.63
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 178 PRKAQRCSSKGV-ALRTPR*ASPSRLGASTPPPPPFAQSR 62
           P+K +   SK   A+  PR +  +R G+    PPPF   R
Sbjct: 819 PQKLRIVVSKSANAMHPPRGSRHTRQGSEASSPPPFLDDR 858


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 78  GGGGGVDAPSREGDAQRGVRRA 143
           GGGGG  + SR  +A+R  R A
Sbjct: 305 GGGGGKLSSSRHVEAERNARNA 326


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 237 SDRSYHHGTVVPEMAHRHQPHEKH 166
           +D++ HH +  P+   +HQ H  H
Sbjct: 636 ADQTDHHQSQQPQQQQQHQHHHHH 659


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -1

Query: 354 PREAISASAPGLRRPIWRSSPMTPPSTTRVGRRLASSTTSDRSYHHGTVVPEM 196
           P+ + S+++     PI   S   PPS+    RR  +++ S      GT+ P++
Sbjct: 514 PKSSASSTSLNHSNPI---SSSAPPSSIVSRRRFFNTSASSSVTSEGTITPDL 563


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -1

Query: 354 PREAISASAPGLRRPIWRSSPMTPPSTTRVGRRLASSTTSDRSYHHGTVVPEM 196
           P+ + S+++     PI   S   PPS+    RR  +++ S      GT+ P++
Sbjct: 515 PKSSASSTSLNHSNPI---SSSAPPSSIVSRRRFFNTSASSSVTSEGTITPDL 564


>AY344835-1|AAR05806.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 179 PTKSTAVLFKRGRPPNTTLSIPL-PTRRVNTPAPAVRPITMFDQPIP 42
           PT +T        PP TT ++ + PT    T AP     T  DQP P
Sbjct: 201 PTTTTTWSDLPPPPPTTTTTVWIDPTATTTTHAPTT-TTTWSDQPPP 246


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
            differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 116  PLPTRRVNTPAPAVRPITMFDQPIPWAP 33
            P PT R+  P   V       QP+P AP
Sbjct: 919  PPPTHRLEQPPQVVAAAPTQQQPLPPAP 946



 Score = 23.0 bits (47), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 78  GGGGGVDAPSREGDAQR 128
           GGGGG D   R+ D +R
Sbjct: 228 GGGGGRDRDHRDRDRER 244


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 19/64 (29%), Positives = 24/64 (37%)
 Frame = -3

Query: 232 PQLPPWDSCSRNGASTSTPRKAQRCSSKGVALRTPR*ASPSRLGASTPPPPPFAQSRCST 53
           P  PP    +RNG        +  C+     +     AS +   A    PPPFA  R  T
Sbjct: 77  PPTPP----TRNGTIFRYRSNSASCTGGAAPILESDGASRAAPLAVPLSPPPFAVGRSGT 132

Query: 52  SPYR 41
            P R
Sbjct: 133 LPER 136


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
            growth factor receptorprotein.
          Length = 1433

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 339  SASAPGLRRPIWRSSPMTPPSTTRVGRRLASSTTSDRSYHH 217
            SA  PG    +    P +PP+ T +G  L+ + T   S  H
Sbjct: 1374 SADQPGAAAGLHHQQPSSPPTQT-IGIPLSPTETEATSSEH 1413


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 175 RKAQRCSSKGVALRTPR*ASPSRLGASTPPPPPFAQSRCSTSPYRGPRR 29
           R++ R   +  + R+P    P+R  + +  P  + +SR ++ P R PRR
Sbjct: 259 RRSPRSGGRWPSCRSP----PARRRSRSTRPTSWPRSRPTSKPKRLPRR 303


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = -1

Query: 228 SYHHGTVVPEMAHRHQPHE--KHSGALQK 148
           S+HHG       H H  H    H  +LQ+
Sbjct: 710 SHHHGGAAAATGHHHHQHHAAPHHHSLQQ 738


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 263 PTRVVDGGVIGEERQMGLRRP 325
           P R+ + G++GE+  MGL  P
Sbjct: 429 PGRIGERGLMGEKGDMGLTGP 449


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,591
Number of Sequences: 2352
Number of extensions: 15581
Number of successful extensions: 56
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)