Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0192
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    33   0.019
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   1.7  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   2.9  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   5.1  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   9.0  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   9.0  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   9.0  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 33.5 bits (73), Expect = 0.019
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 43  MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 198
           ++ A+AG+    LS +  N+D+  K+    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 168 FQALTDSTVVVAGEDAVVQFLLEVLV 91
           F  +T   V+V  EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 91  NQDLEEKLYNSILTGDYDSAVRQSLE 168
           + DLE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 56  ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 166
           AR SLNY ++   + SRRN    ++P      S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 17  NFSLYLRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRA 163
           N S  + C  SP A A  + P+TL         T ASS  T+  + V A
Sbjct: 242 NDSFMVGCIYSP-AEAKEHVPKTLRNSNKDLEMTDASSSETSMSIPVHA 289


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 154 RQSLEYESQGKGSIIQNVVNNLIIDKRRN 240
           ++S++ ES  K S  +NV+    +D +RN
Sbjct: 62  KESIKDESSAKSSETENVLEFATLDSKRN 90


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 371 SEVVVSVNDLDIVSGHDE 318
           SE+VVSVN LD++S  ++
Sbjct: 316 SEIVVSVNKLDLMSWSED 333


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 391 PIPRMRELPTAMV*TSILNSSVGSSLPCGRTTECT 495
           P  R+ + P  +  TS  NSS  +  PCG     T
Sbjct: 39  PSIRLSDGPNGIRGTSFFNSSPSACFPCGTALGAT 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,692
Number of Sequences: 5004
Number of extensions: 45095
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)