Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0192
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0468 + 10633992-10634064,10635998-10636130,10636244-106363... 30 1.3
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 29 2.2
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526... 28 5.2
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 27 6.8
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254... 27 6.8
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804... 27 6.8
04_04_0018 - 22178972-22179179,22179264-22179502 27 9.0
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142... 27 9.0
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547... 24 9.1
>02_02_0468 +
10633992-10634064,10635998-10636130,10636244-10636315,
10637028-10637171,10637271-10637342,10637451-10637516,
10637603-10637673,10637796-10637936,10638347-10638688,
10638989-10639383,10639481-10639795
Length = 607
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 109 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYCTSCGSATDRKL 288
K+Y +L AV++ +YES G + V + + RN ++ C + T+R L
Sbjct: 297 KVYKGVLPDGTKIAVKRLTDYESPGGEAAFLREVELISVAVHRNLLKLIGFCTTQTERLL 356
Query: 289 L 291
+
Sbjct: 357 V 357
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -3
Query: 230 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 66
L+++ L+ W + P L + S L SP + SF S + S D++T
Sbjct: 36 LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95
Query: 65 TPALAASMHIANTTR 21
P A+ +A TTR
Sbjct: 96 VPTTTAAARVAATTR 110
>03_05_0834 - 28051067-28051381,28051675-28052120,28052330-28052671,
28053170-28053310,28053419-28053489,28053575-28053640,
28053874-28054017,28054149-28054207,28054246-28054369,
28054730-28054862,28055138-28055187,28055715-28055824,
28057355-28057436,28057536-28057705,28057812-28058498,
28058645-28058794,28058908-28059039,28059444-28059594,
28060253-28060344,28062478-28062585
Length = 1190
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 109 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYCTSCGSATDRKL 288
K+Y L AV++ +YES G + V + + RN + C + T+R L
Sbjct: 863 KVYKGALPDGTKIAVKRLTDYESPGGEAAFLREVELISVAVHRNLLRLIGFCTTQTERLL 922
Query: 289 L 291
+
Sbjct: 923 V 923
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 246 GVLYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIA 416
G L + V + ++ + L L + GN ++ N +L K+G+ SN IA
Sbjct: 244 GKLAQYCVASEMDVAVRVLKLYAALALCGNGAMVLLNNEDLMAKVGALLGKSNPSIA 300
>06_01_0353 +
2545995-2546208,2546362-2546492,2546846-2546929,
2546972-2547316,2547327-2547582,2547683-2547879
Length = 408
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 94 QDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYC 255
++ + KL I + + + +L S G G IQN +N + R N YC
Sbjct: 156 KEYQSKLAALIGQKNATAILSDALYIVSTGTGDFIQNYYHNASLSSRYNVNSYC 209
>04_01_0613 -
8042568-8042686,8043107-8043206,8043550-8043594,
8043691-8043770,8045082-8046322,8047077-8047507
Length = 671
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = +1
Query: 19 LLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 198
+LV + S ++ + A ++ ++ EKLYN + + + Y GK I
Sbjct: 196 MLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIA 255
Query: 199 QNVVNNL 219
++ N +
Sbjct: 256 HSIFNGM 262
>04_04_0018 - 22178972-22179179,22179264-22179502
Length = 148
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 32 LRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVR 160
L CAC+PP R + + + R +AS T L VR
Sbjct: 18 LSCACAPPTRGTRRRRLAVAVRVRVRVRASASEAMATEKLGVR 60
>01_05_0309 -
20713774-20713818,20713838-20713915,20714044-20714222,
20714296-20714556,20715222-20715393,20715501-20715662,
20716435-20716863,20717729-20717785,20717872-20718842,
20719098-20719182,20719269-20719637,20719756-20720001,
20720090-20720362,20720663-20720827,20721328-20721556,
20721727-20722168,20723152-20724138,20724352-20724517,
20725070-20725728,20725820-20726186
Length = 2113
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 127 LTGDYDSAVRQSLEYESQGK--GSIIQNVVNNLIIDKRRNTMEYCTSCGSA 273
L + A+ QSL Y Q K +++Q++V ++ +K NT+ C+ CG +
Sbjct: 712 LASYHPRALIQSL-YSGQWKRANTVLQHLVQSMQANKISNTLLECSFCGKS 761
>03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,
5478055-5478132,5478227-5478280,5478466-5478650,
5478781-5480374,5480506-5480700,5480753-5480904,
5481213-5481486,5481597-5481733,5482219-5482258,
5482773-5483261,5483605-5484168
Length = 1477
Score = 23.8 bits (49), Expect(2) = 9.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 121 SILTGDYDSAVRQSLEYESQG 183
S L D DS +R + +YES+G
Sbjct: 1265 SNLASDEDSHIRHTNDYESEG 1285
Score = 21.4 bits (43), Expect(2) = 9.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 172 ESQGKGSIIQNVVNNLIIDKRRNTMEYCTS 261
E+QG+GS+ +++ + +D + N + TS
Sbjct: 1319 ENQGQGSLEEDMCHMAGLDTQSNLLHQDTS 1348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,791
Number of Sequences: 37544
Number of extensions: 312711
Number of successful extensions: 969
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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