Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0192
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   28   5.3  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        27   7.0  
SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)               27   9.3  
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 308 KL*THHGRKLCQDHLQKLQPRSEAR 382
           +L  HHGR+L +DHL    PR   R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 47   SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 187
            +PP+R S    R+     SR    T S+P T +  S RA + R KA+
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +2

Query: 98  TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 193
           TSR NC   + P +T ++S      +R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692


>SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)
          Length = 354

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 473 QGNELPTDEFSMLVYTIAVGNSLIRGIGCGTELQSEVVVSVN 348
           Q NE+   +FS +  T+       R IGC T  Q + VV+ N
Sbjct: 274 QHNEMEISKFSTVTATVLGVQKASRSIGC-TSCQRQTVVTPN 314


>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 212 LTTFWMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSSRSWLEVSA 78
           +  F  ++PL  L+YS+  RTA+   P    ++ +  R+W E  A
Sbjct: 185 VVNFEPLKPLFMLAYSRS-RTAIPAGPALPNIFGYPHRNWKEAGA 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,938,765
Number of Sequences: 59808
Number of extensions: 351722
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)