Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0192
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    33   0.16 
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    28   3.5  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    28   3.5  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    28   3.5  
AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlec...    27   6.1  
Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical p...    27   8.0  
AL132904-17|CAC35850.1|  240|Caenorhabditis elegans Hypothetical...    27   8.0  
AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical ...    27   8.0  
AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 38  CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 193
           CA +  A ++LNY RT L+    +NC     P TT + +  A N    + AP
Sbjct: 38  CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
 Frame = +3

Query: 300 FPLNFRLIMAGNYVKIIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKHTELVS 455
           FP+N+  I + NY+     +YN+ LK     T+  N+ +   DG       + K++    
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKYSGYYE 376

Query: 456 WKFITLWENNRVYFKIHKLST 518
           W F  +   N +       ST
Sbjct: 377 WPFFNVSTGNSMLVTFRSNST 397


>AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical
           protein K09C6.7 protein.
          Length = 587

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 486 CCSPTR**TSN*RVQYACLHHRRRQFSHSRDWLWNRASERGCS 358
           C +P R    + R  +    HRR+++   R W+  RA + G S
Sbjct: 147 CSAPQRKAARHLRWDWTLARHRRKRYQKYRRWMAGRAKKMGLS 189


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 96  RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 206
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 96  RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 206
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 96  RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 206
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical
           protein T10B5.2 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 486 CCSPTR**TSN*RVQYACLHHRRRQFSHSRDWLWNRASERG 364
           C +P R    + R  +    HRR+++   R W+  RA + G
Sbjct: 31  CSAPQRKAARHLRWDWTLTRHRRKRYQKYRRWMEGRAKKMG 71


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 234  TEHHGVLYKLWVGNGQEIVRKYFPLN 311
            T++  VLY+  +GNG++IV    P+N
Sbjct: 2597 TDYGTVLYEFDIGNGRQIVETTNPIN 2622


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 234  TEHHGVLYKLWVGNGQEIVRKYFPLN 311
            T++  VLY+  +GNG++IV    P+N
Sbjct: 2597 TDYGTVLYEFDIGNGRQIVETTNPIN 2622


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 264 WVGNGQEIVRKYFPL---NFRLIMAGNYVKII 350
           W+ +GQEI R Y PL   N   +  G Y++I+
Sbjct: 13  WLSSGQEITRDYSPLLDKNTSAVNPGIYLRIM 44


>AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlecan
           protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 234 TEHHGVLYKLWVGNGQEIVRKYFPLN 311
           T++  VLY+  +GNG++IV    P+N
Sbjct: 147 TDYGTVLYEFDIGNGRQIVETTNPIN 172


>Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical
           protein R08H2.13 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = -3

Query: 293 SNNFLSVADPQLVQYSMVFRLLSMIRLLTTFWMMEPLPWLSYSKL*RTALS*SPVRMLLY 114
           S +F S+A  +L++    + +  MI LLT  +    L     +KL R +   SP+ + L 
Sbjct: 87  SKSFGSIAIGKLMELGSCYGM--MIVLLTINFYYRYLSVTCPAKLTRFSAKNSPIWVFLI 144

Query: 113 SFSSRSWLEVS 81
            F+S +W  +S
Sbjct: 145 LFNSSTWFVLS 155


>AL132904-17|CAC35850.1|  240|Caenorhabditis elegans Hypothetical
           protein Y111B2A.21 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 282 EIVRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWK 461
           EI++ Y P+ FR  +    V    R+   A K+ S  +PS    A+G G +  T+   W 
Sbjct: 116 EIIQ-YLPMPFRTSIPMKLVIFAVRSEESAEKIRSLIDPSMWIAAFGGGTE--TQKFLWS 172

Query: 462 FITL 473
            +T+
Sbjct: 173 ELTV 176


>AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical
           protein F25G6.7a protein.
          Length = 527

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 334 FPAMMSLKFNGKYFLTISCPLPTHSLYSTPW 242
           F   M+ KFN KY + +S  + + + ++ PW
Sbjct: 124 FTGGMADKFNAKYMILVSVAIASLANFTLPW 154


>AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical
           protein F25G6.7b protein.
          Length = 513

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 334 FPAMMSLKFNGKYFLTISCPLPTHSLYSTPW 242
           F   M+ KFN KY + +S  + + + ++ PW
Sbjct: 110 FTGGMADKFNAKYMILVSVAIASLANFTLPW 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,895
Number of Sequences: 27780
Number of extensions: 260265
Number of successful extensions: 1023
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)