Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0192
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.27 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = +1

Query: 4   PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 183
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 184 KGSIIQNVVNNLIIDKRRNTMEY 252
              +  N+    I      TMEY
Sbjct: 58  PAVVRVNIFVRSISKIDDVTMEY 80


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 20/83 (24%), Positives = 37/83 (44%)
 Frame = +1

Query: 4   PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 183
           P  +KLLV+    +  +           + ++ E+++ ++IL G YD+ +R S E  + G
Sbjct: 3   PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57

Query: 184 KGSIIQNVVNNLIIDKRRNTMEY 252
              +  N+    I       MEY
Sbjct: 58  PAIVRVNLFVRSIATISDIKMEY 80


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 80  ADSSTTPALAASMHIANTTRSFI 12
           A+   +  +A  +HI+N T SF+
Sbjct: 396 ANKMESSGMAGRVHISNATLSFL 418


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 293 SNNFLSVADPQLVQYSMVFRL 231
           S+ FLS+  P L+ Y + FR+
Sbjct: 12  SSVFLSLLIPALILYFIYFRI 32


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 423  DGVDKHTELVSWK 461
            D +D+HT  V+WK
Sbjct: 986  DDLDQHTLKVTWK 998


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 251 YSMVFRLLSMIRLLTTFWMMEPLPWL 174
           Y+M F         T F  ++P PW+
Sbjct: 213 YNMTFAQNGPFNTTTIFVPVKPCPWI 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,380
Number of Sequences: 438
Number of extensions: 3451
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)