Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0192
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    32   0.20 
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    32   0.20 
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr...    32   0.20 
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   1.1  
At1g12700.1 68414.m01473 helicase domain-containing protein / pe...    29   1.4  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    28   3.3  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    28   3.3  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    27   5.7  
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    27   5.7  
At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative / i...    27   7.6  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +1

Query: 70  ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 237
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +1

Query: 70  ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 237
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 613

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 109 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYCTSCGSATDRKL 288
           K+Y  +L  +   AV++  ++ES G  +  Q  V  + +   RN +     C + T+R L
Sbjct: 303 KVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLL 362

Query: 289 L 291
           +
Sbjct: 363 V 363


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 43  MLAASAGVVELSADTSNQDLEEKLYNSILTGDYD 144
           +LA + G  ELS   + Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


>At1g12700.1 68414.m01473 helicase domain-containing protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles PF01535: PPR repeat, PF00271:
           Helicase conserved C-terminal domain
          Length = 828

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +1

Query: 133 GDYDSAVRQSLEYESQG---KGSIIQNVVNNLIIDKRRNTMEYCTSCGSATDRKLLE 294
           GD  ++ +   E +S G     S I+ V++ L+   +R T+ YC S GS + + LLE
Sbjct: 547 GDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLE 603


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 109 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 225
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 109 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 225
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 503 DLEVHSVVLPQGNELPTDEFSMLVYTIAVGNSLIRGIGCGTELQSEVVVSVN 348
           D EV  +V  QGN +P     +L   IA  + L + +GC +   ++++V  N
Sbjct: 255 DEEVRKMVYIQGNSVPHANHGVLEKLIAARHELSQMMGCNS--YADIMVEPN 304


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +2

Query: 17  NFSLYLRCACSPPAR--ASLN---YPRTLLTKTSRRNCTT 121
           NFSL L+C   PP +    LN   +P TL+ K+    CTT
Sbjct: 228 NFSLDLQCVFHPPKQNPHDLNIHDHPLTLMPKSISFTCTT 267


>At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative /
           isoleucine--tRNA ligase, putative similar to SP|P41252
           Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)
           (Isoleucine--tRNA ligase) (IleRS) (IRS) {Homo sapiens};
           contains Pfam profile PF00133: tRNA synthetases class I
           (I, L, M and V)
          Length = 1190

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +3

Query: 444 ELVSWKFITLWENNRVY--FKIHKLST 518
           E V W F  LWE N VY  FK+   ST
Sbjct: 158 ESVWWVFSQLWEKNLVYRGFKVMPYST 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,736,752
Number of Sequences: 28952
Number of extensions: 241040
Number of successful extensions: 661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)