Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0190
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    60   1e-10
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    27   1.3  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   1.3  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   5.2  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   6.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   9.0  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   9.0  

>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 29/67 (43%), Positives = 40/67 (59%)
 Frame = +1

Query: 22  LYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAW 201
           LY  QL  N++W P+F+GL   KLA  ++ +L+G       ++  +  TA   LIPYLAW
Sbjct: 90  LYIAQLAANFAWMPLFYGLAKPKLALADLGILTGLVGWLAKTWWPLAPTASKWLIPYLAW 149

Query: 202 LGYASSL 222
           LGYA  L
Sbjct: 150 LGYAGYL 156


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -1

Query: 170 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSC----TPYNVR 15
           A L T P+  V  T    +T++S   ++K++    +G+ ++L+ SC    TP+ +R
Sbjct: 132 APLGTYPHPCVHLTV---NTDVSSPLAIKTYVSSPVGITERLADSCAFVPTPFTIR 184


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +2

Query: 125 QQWQRHCHSAVSIRQPVCYSYHTWLGSDMPAPFLTTSGRTILNREGTIKIL 277
           Q+W   CH ++      CY     +   +PA  L T  R I   + ++ IL
Sbjct: 799 QKWNEACHVSIHSLMLCCYELPVSIRKQLPA-ILVTLSRLITKPDLSVHIL 848


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 197 LGSDMPAPFLTTSGRTILNREGTIKILTMEY 289
           +G D P     TS R++L+R GT+  +   +
Sbjct: 163 IGGDYPMSATITSERSLLSRRGTLLSIVFSF 193


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 197 LGSDMPAPFLTTSGRTILNREGTI 268
           +G D P     TS R+ LNR GT+
Sbjct: 168 IGGDYPMSAAITSERSKLNRRGTL 191


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 161 LTLPNDSVVATAAPDSTEISMNASLK 84
           + +PNDS  A+  P  T  + NAS K
Sbjct: 347 IQMPNDSTQASLMPSYTRKTSNASKK 372


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 218 ELAYPSQAKYGMSNKPAVL---LTLPNDSVVATAAPDSTEISMNASLKSFNPKKIG 60
           E+AY     +  +NKP          N+S +  AAP S E+++ +   SF+ +  G
Sbjct: 147 EIAYKLAMLHHFNNKPRPTGDYTAEENESCLNNAAPGSPEVAVLSFRHSFHGRLFG 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,888
Number of Sequences: 5004
Number of extensions: 40832
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)