Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0190
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0370 + 2909216-2909797                                           36   0.015
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    30   0.98 
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    28   5.2  
01_07_0005 + 40364385-40364732,40365299-40365448                       28   5.2  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    27   6.9  
06_03_1181 - 28227746-28229115,28229130-28229307                       27   9.1  

>05_01_0370 + 2909216-2909797
          Length = 193

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 16  LTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYL 195
           L  +  QL+   +W P+  GL          + ++  A A    FG VN  AG L  P +
Sbjct: 119 LAPFVAQLVAALAWAPLALGLAAPAAGLACCAAMAAGAAACARGFGGVNPVAGDLAKPCV 178

Query: 196 AWLGYASSLSY 228
           AW    + ++Y
Sbjct: 179 AWAVLLAVINY 189


>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = +1

Query: 142 LSFGSV-NKT---AGLLLIPYLAWLGYASSL 222
           L+FGS+ N T    G+LL+  LAWLG ASSL
Sbjct: 551 LTFGSLANSTPYLGGILLVIVLAWLGAASSL 581


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
 Frame = +1

Query: 142 LSFGSV-NKT---AGLLLIPYLAWLGYASSL 222
           LSFGS+ N T    G+LL+  LAWLG   SL
Sbjct: 529 LSFGSLANSTPYLGGILLVIVLAWLGAVRSL 559


>01_07_0005 + 40364385-40364732,40365299-40365448
          Length = 165

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +1

Query: 109 SVLSGAAVATTLSFGSVNKTAGLLLIPYLAWLGYASSLS 225
           ++L GA+VA  L  GSV    GLLL+P++A +     LS
Sbjct: 58  TMLLGASVALMLC-GSVTFAIGLLLMPWVAGVALLFGLS 95


>02_01_0246 +
           1617326-1617367,1618903-1624419,1625040-1625498,
           1625603-1625887,1626016-1626030,1626339-1626419,
           1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 108 DLNECQLEVLQSEENRSPRPVE 43
           ++ E QL+ L+SEE +SP P+E
Sbjct: 662 NIAELQLQGLESEEIKSPEPIE 683


>06_03_1181 - 28227746-28229115,28229130-28229307
          Length = 515

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 206 PSQAKYGM--SNKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQ 48
           PSQA+  +   N P   +T+P  ++  T  P   +I +   + SF P  I +Q Q
Sbjct: 103 PSQAQIPILTQNTPQAQITIPTQNLAQTLIPSQNQIPIQTHI-SFQP-HIPIQTQ 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,676
Number of Sequences: 37544
Number of extensions: 249263
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)