Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0190
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         30   1.3  
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)           27   9.4  
SB_24376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_21040| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_7501| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +1

Query: 85   FKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWLGYASSLSYYIWKNN 246
            F    +++  + G +V   +  G  +    ++ +    W+G   S  YY+WK+N
Sbjct: 1007 FAFVIVQVQGICGTSVIP-VPCGPTDNMKYVVAVGLFIWVGQFISTGYYVWKSN 1059


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 343 ICSKLIPFLTSIFKA*SKIFHCQDLYCPFTV*DCSSRCSKKGSWHI 206
           +C+KLIP    + K   K++H   L+C FT   C ++      +H+
Sbjct: 710 VCAKLIPATELVMKVLGKVYH---LHC-FTCTTCHNQLVPGDRFHV 751


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 149  NDSVVATAAPDSTEISMNASLKSFNPKKIGVQ-DQLSSSCTPYNV 18
            NDSV   + PD   I MN SL+  N  +  +  D++S + + +NV
Sbjct: 1277 NDSVKGVSRPDDFIIKMNLSLRLSNDARHEIAVDKISMTYSWHNV 1321


>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
          Length = 889

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 109 SVLSGAAVATTLSFGSVNKTAGLL-LIPYLAWLGYASSLSYYIWKNNPKP 255
           ++L  A +   +    V+  + LL    +L W+ Y +++S  +W    KP
Sbjct: 769 AILFSAFICVLMMIPDVSTFSSLLNYFSFLTWVNYGATISGLLWMRYRKP 818


>SB_24376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 143 SVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGSSC 3
           +VV ++  +S  I+    L+ F  K+ GV+ Q   +CTP N+   SC
Sbjct: 8   TVVTSSFQESGAIAQWYGLR-FTRKRTGVRIQSLPTCTPVNLPFISC 53


>SB_21040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 38  CYSTGLGLLFSSD--*RTSSWHSLRSQC 115
           CY  G+GL F SD   +T SW    S C
Sbjct: 442 CYRNGIGLTFPSDYTKKTFSWDKYLSLC 469


>SB_7501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 157 VNKTAGLLLIPYLAWLG 207
           V  T GLL+IPY +W+G
Sbjct: 206 VGITLGLLIIPYQSWIG 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,290,870
Number of Sequences: 59808
Number of extensions: 300789
Number of successful extensions: 627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)