Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0190
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical pr... 46 1e-05
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 32 0.29
AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 32 0.29
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 30 0.87
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical pr... 29 1.5
U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone... 29 1.5
AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein. 29 1.5
AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein. 29 1.5
AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical ... 29 2.7
AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical ... 29 2.7
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 28 4.7
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 28 4.7
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical... 27 8.1
>Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical
protein C41G7.3 protein.
Length = 553
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +1
Query: 7 ELPLTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLI 186
+L L LYG + L + PI K+ + +V+S A A + +F ++K AGLL++
Sbjct: 469 KLALGLYGASVTLAVATIPIV-KKKELGCLWKNTTVVSLTAAAASFAFYKIDKKAGLLVV 527
Query: 187 PYLAWLGYASSLSYYIWKNN 246
P+ W + + L+Y I K N
Sbjct: 528 PFAVWTAFYAYLAYSIKKEN 547
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 31.9 bits (69), Expect = 0.29
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +1
Query: 7 ELPLTLYGVQLLLNWSWTPIFFGLKDFKL---AFIEISVLSGAAVATTLSFGSVNKTAGL 177
ELP T Q N+S+ F + ++ A I+ ++L + T + FG + T+GL
Sbjct: 98 ELPPTGDVWQFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAV-FGELLTTSGL 156
Query: 178 LLIPYLAWLGYASSLSY-YIWKN 243
+ P + WL ++S + Y+ K+
Sbjct: 157 ITDPRITWLTFSSGYDFGYLLKS 179
>AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 31.9 bits (69), Expect = 0.29
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +1
Query: 7 ELPLTLYGVQLLLNWSWTPIFFGLKDFKL---AFIEISVLSGAAVATTLSFGSVNKTAGL 177
ELP T Q N+S+ F + ++ A I+ ++L + T + FG + T+GL
Sbjct: 98 ELPPTGDVWQFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAV-FGELLTTSGL 156
Query: 178 LLIPYLAWLGYASSLSY-YIWKN 243
+ P + WL ++S + Y+ K+
Sbjct: 157 ITDPRITWLTFSSGYDFGYLLKS 179
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 155 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCT 30
LP D V + D E++ S KS P++IG Q SS T
Sbjct: 878 LPEDPVSVQSRSDVCEVTAETSQKSVGPERIGGDAQSSSENT 919
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 155 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCT 30
LP D V + D E++ S KS P++IG Q SS T
Sbjct: 878 LPEDPVSVQSRSDVCEVTAETSQKSVGPERIGGDAQSSSENT 919
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Frame = +2
Query: 11 YLSHCTEYS--CYSTGLGL----LF---SSD*RTSSWHSLRSQCCPGQQWQRHCHSAVSI 163
Y +H TE++ ++ L L LF SS+ W+ +R+ P RH A+ I
Sbjct: 42 YFTHTTEFNKNIHNAPLSLRENTLFAFNSSNCPYKEWNQIRTDSIPNAN--RHADWAIQI 99
Query: 164 RQPVCYSYHT 193
++P Y YHT
Sbjct: 100 KKPSKYLYHT 109
>Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical
protein F44A6.2 protein.
Length = 534
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +3
Query: 174 FVTHTILGLARICQLPFLLHLEEQS*TVKGQ*RS*QWNILLYALNIDVRKGINFEQIIIR 353
F +T + + I PF + + E S R W I + +++D+++ +NF + I +
Sbjct: 267 FSFYTDIKIRSIVARPFNVRINEDS----KMNRLNAWQIYAHEIDVDIKEVVNFVKEIPK 322
Query: 354 FH*ISTVHRNVIIINNA 404
F+ I+ + V++ NA
Sbjct: 323 FNFINGNDKAVLLRKNA 339
>U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone
receptor familymember CNR14 protein.
Length = 534
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +3
Query: 174 FVTHTILGLARICQLPFLLHLEEQS*TVKGQ*RS*QWNILLYALNIDVRKGINFEQIIIR 353
F +T + + I PF + + E S R W I + +++D+++ +NF + I +
Sbjct: 267 FSFYTDIKIRSIVARPFNVRINEDS----KMNRLNAWQIYAHEIDVDIKEVVNFVKEIPK 322
Query: 354 FH*ISTVHRNVIIINNA 404
F+ I+ + V++ NA
Sbjct: 323 FNFINGNDKAVLLRKNA 339
>AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein.
Length = 553
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +3
Query: 174 FVTHTILGLARICQLPFLLHLEEQS*TVKGQ*RS*QWNILLYALNIDVRKGINFEQIIIR 353
F +T + + I PF + + E S R W I + +++D+++ +NF + I +
Sbjct: 264 FSFYTDIKIRSIVARPFNVRINEDS----KMNRLNAWQIYAHEIDVDIKEVVNFVKEIPK 319
Query: 354 FH*ISTVHRNVIIINNA 404
F+ I+ + V++ NA
Sbjct: 320 FNFINGNDKAVLLRKNA 336
>AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein.
Length = 556
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +3
Query: 174 FVTHTILGLARICQLPFLLHLEEQS*TVKGQ*RS*QWNILLYALNIDVRKGINFEQIIIR 353
F +T + + I PF + + E S R W I + +++D+++ +NF + I +
Sbjct: 267 FSFYTDIKIRSIVARPFNVRINEDS----KMNRLNAWQIYAHEIDVDIKEVVNFVKEIPK 322
Query: 354 FH*ISTVHRNVIIINNA 404
F+ I+ + V++ NA
Sbjct: 323 FNFINGNDKAVLLRKNA 339
>AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical
protein M04G7.3b protein.
Length = 437
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 104 SMNASLKSFNPKKIGVQDQLSSSCTPYN 21
S+N+S+K P KIG+ LS+ TP N
Sbjct: 401 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 428
>AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical
protein M04G7.3a protein.
Length = 479
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 104 SMNASLKSFNPKKIGVQDQLSSSCTPYN 21
S+N+S+K P KIG+ LS+ TP N
Sbjct: 443 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 470
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 48 LVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 161
L+L +++ +E L H D V S GNDT+ CQ
Sbjct: 11 LLLSNFWPTVESLNYKCHNDQILVVQSFGNDTIRMHCQ 48
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 48 LVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 161
L+L +++ +E L H D V S GNDT+ CQ
Sbjct: 11 LLLSNFWPTVESLNYKCHNDQILVVQSFGNDTIRMHCQ 48
>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
protein Y47D3A.29 protein.
Length = 1428
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1
Query: 40 LLNWSWTPIFFGLK-----DFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLL 183
L+NWSW + L+ + +I+IS + G + T+ G + LLL
Sbjct: 726 LINWSWNDLLLSLRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLL 778
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,500,083
Number of Sequences: 27780
Number of extensions: 229856
Number of successful extensions: 555
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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