Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0188
         (522 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    25   0.41 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.8  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   5.0  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   8.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 245 SIPSL-NTVWPASWITFPSLSSPVISISTW*PASLLLV*LKTKTPSPRPNSTF 400
           S+P L +  WP +W +    SSP  S  T  P  ++   L+   P+ +P + F
Sbjct: 72  SVPRLGHPQWPFAWGSLXRSSSPQTSAPTGPP--IVRCALRKHKPNRKPRTPF 122


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 197 SYGRWGNGHGVE*SNHCKPRYARHSRINEQCR 102
           S  RW N +G   +NH +      +R N   R
Sbjct: 372 SNNRWHNNNGNNSNNHWRKNNPNDNRNNTSSR 403


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 417 IRHLPPPHREQHQCLAFLQQGS 482
           ++  PPP  +   C A + +GS
Sbjct: 34  LKTTPPPEEDNRGCAASVGEGS 55


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 169 PCPLPHLPYETQWSGGR 219
           P  +PH PY  Q++  R
Sbjct: 380 PTRVPHRPYVAQYNARR 396


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,011
Number of Sequences: 336
Number of extensions: 2765
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)