Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0188
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    25   6.8  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   6.8  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   9.0  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 277 IMDHFSVFIVTCNQHIDLVAGITVIGMIK 363
           I+  FS+F++TC   +DL +     G+I+
Sbjct: 6   ILSFFSLFVITCFAKLDLNSKTDADGVIQ 34


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 286 HFSVFIVTCNQHIDLVAGIT 345
           HF+VFI + N H  L+AG T
Sbjct: 115 HFTVFINSFNIHRFLIAGFT 134


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 266 VWPASWITFPSLSSPVISIST 328
           V+ +SW+T  + SSP + +ST
Sbjct: 497 VYHSSWVTSNAYSSPTVVLST 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,323
Number of Sequences: 5004
Number of extensions: 46349
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)