Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0188
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0060 + 7897868-7898296                                           29   1.7  
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960...    28   5.2  
02_02_0635 - 12461466-12461789,12461867-12462076                       28   5.2  
04_03_0917 + 20798977-20801369,20801578-20801581                       27   6.9  
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    27   6.9  
03_05_0330 + 23218018-23218398                                         27   6.9  
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350...    27   9.1  
02_02_0032 - 6227556-6227926,6228322-6231085                           27   9.1  

>11_02_0060 + 7897868-7898296
          Length = 142

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 134 ARHSRINEQCRRLHADQCAQRRWLDASAAVILRQDVW 24
           AR  R  E   R   D+  +RRW+D    + L   VW
Sbjct: 28  ARRGRRQEAAARRRPDKAEKRRWVDEQVGLHLAARVW 64


>07_01_1074 -
           9599465-9599545,9599632-9599690,9600070-9600143,
           9600797-9600996,9601074-9601365,9601665-9602411,
           9602653-9602696,9602714-9602827,9603590-9603838,
           9603922-9603927
          Length = 621

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 390 FGLGEGV--FVFNHTNNSDAGYQVDMLITG 307
           FGL E +  F+FNH  +SD  Y +    TG
Sbjct: 499 FGLAEQLCGFIFNHIISSDGAYNISKAPTG 528


>02_02_0635 - 12461466-12461789,12461867-12462076
          Length = 177

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
 Frame = +3

Query: 285 SLFRLYRHL*SAYRPGSRHHCYWYD*RQKRLRQDQTPLSSHW**IRHL--PPPHREQ--H 452
           SL R YR L       SR +  WY    K L         H   +  L  PPPH E   H
Sbjct: 98  SLIRCYRVLIQWASASSRKNLGWYGPDNKLLGYVDVGRGGHLPLVLSLSPPPPHTEYRCH 157

Query: 453 QCLAFLQQG 479
            CL  ++ G
Sbjct: 158 LCLLDMRSG 166


>04_03_0917 + 20798977-20801369,20801578-20801581
          Length = 798

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 211 LTIASHTADGVTGMGSSEVTIANPGTLDILASTNSAGDYTLTNALKGDGLMRVQLSSSDK 32
           L    ++ D  +GM S E+T  N  T  ILA+ NS+  Y  +    G     +   +  +
Sbjct: 177 LVSRKNSVDPASGMYSYELTDNNGSTRFILAALNSSIPYWSSGEWNGHYFGSIPEMTGQR 236

Query: 31  MFGFT 17
           +  FT
Sbjct: 237 LIDFT 241


>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 106 HCSLMRECRAYRGLQWLLHSTPCPLPHLPYETQ 204
           H SL+    A R L   + +TP P+PH P  +Q
Sbjct: 41  HASLLPHGAALRALATAM-ATPTPMPHTPISSQ 72


>03_05_0330 + 23218018-23218398
          Length = 126

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 265 GVQ*GNTYSGKTLVNDGLLTIASHTADGVTGMGSSEVTI 149
           GV     +SG T   DGL+   +   DGV G  S + T+
Sbjct: 64  GVIAARGHSGGTAAGDGLMNKVAQLMDGVDGARSGKETV 102


>03_06_0769 +
           36134298-36134356,36134740-36134919,36134975-36135007,
           36135008-36135128,36135227-36135266,36135811-36135863,
           36135937-36135998,36136354-36136506,36136949-36137160,
           36137480-36138972,36140560-36141483,36141734-36142043,
           36143818-36143874,36144114-36144167,36144452-36144510
          Length = 1269

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -1

Query: 387 GLGEGVFVFNHTNNSDAGYQVDMLITGDDKDGKVIHDAGHTVFNEGILIAVK 232
           G  E   V+      D+G  +D L  G  K   ++    H+V +E  +I V+
Sbjct: 603 GASEDFIVYGQEKPMDSGSYLDPLAEGQYKSPTLMEKNMHSVADESFMIPVR 654


>02_02_0032 - 6227556-6227926,6228322-6231085
          Length = 1044

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 232 TLVNDGLLTIASHTADGVTGMGSSEVTIANPGTLDILASTNSAGDYTLTNAL 77
           +L N   L +   TA G+TG+  S  ++ N   LD+  +   AGD++  ++L
Sbjct: 410 SLANMSKLEMIYLTATGLTGVVPSFGSLPNLQDLDLAYNQLEAGDWSFLSSL 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,601
Number of Sequences: 37544
Number of extensions: 355462
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)