Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0188
(522 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear recep... 28 4.7
U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated ... 27 8.1
U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated ... 27 8.1
U88308-15|AAK68218.1| 548|Caenorhabditis elegans Uncoordinated ... 27 8.1
U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated ... 27 8.1
U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated ... 27 8.1
U88308-12|AAK68216.1| 467|Caenorhabditis elegans Uncoordinated ... 27 8.1
AF144261-1|AAD37369.1| 456|Caenorhabditis elegans AP180-like ad... 27 8.1
AF144260-1|AAD37368.1| 535|Caenorhabditis elegans AP180-like ad... 27 8.1
AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like ad... 27 8.1
AF144258-1|AAD37366.1| 548|Caenorhabditis elegans AP180-like ad... 27 8.1
AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like ad... 27 8.1
>Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical
protein F21H7.4 protein.
Length = 282
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 119 CENVERTGVCNGYFTRPHAR 178
C NV +GV NGYF++P A+
Sbjct: 117 CINVVHSGVTNGYFSQPQAQ 136
>Z96048-5|CAB09422.1| 443|Caenorhabditis elegans Hypothetical
protein F57A10.5 protein.
Length = 443
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 376 FAKTKLHFRRIG--DKSGICRRLTVSSTNV*RSYSRAQKHLSKLLHLD 513
+AKT + F R+ DK + R + ++ TN+ SYS +++L ++ D
Sbjct: 267 YAKTFMFFHRLSSRDKLILTRHVALACTNLHISYSSIRRNLEVIIEPD 314
>AF273808-1|AAG15157.1| 442|Caenorhabditis elegans nuclear receptor
NHR-60 protein.
Length = 442
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 376 FAKTKLHFRRIG--DKSGICRRLTVSSTNV*RSYSRAQKHLSKLLHLD 513
+AKT + F R+ DK + R + ++ TN+ SYS +++L ++ D
Sbjct: 266 YAKTFMFFHRLSSRDKLILTRHVALACTNLHISYSSIRRNLEVIIEPD 313
>U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated
protein 11, isoform c protein.
Length = 657
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
>U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated
protein 11, isoform a protein.
Length = 586
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
>U88308-15|AAK68218.1| 548|Caenorhabditis elegans Uncoordinated
protein 11, isoform h protein.
Length = 548
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
>U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated
protein 11, isoform b protein.
Length = 546
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
>U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated
protein 11, isoform d protein.
Length = 534
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
>U88308-12|AAK68216.1| 467|Caenorhabditis elegans Uncoordinated
protein 11, isoform e protein.
Length = 467
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
>AF144261-1|AAD37369.1| 456|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 456
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
>AF144260-1|AAD37368.1| 535|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 535
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
>AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 546
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
>AF144258-1|AAD37366.1| 548|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 548
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
>AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 586
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 241 YKYSLIEHRMACI-MDHFSVFIVTCNQHIDLVAGITVIGMIKDKNAFAKTKLHFRRIGDK 417
YK + H + C + FS ++ +CN +L A + +G + + + + IG+K
Sbjct: 91 YKALITIHNIMCYGNERFSQYLASCNTTFNLTAFVDKVGGAGGYDMSTHVRRYAKYIGEK 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,794,813
Number of Sequences: 27780
Number of extensions: 277030
Number of successful extensions: 659
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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