Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0188
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.47 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.7  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   7.7  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 181 VTGMGSSEVTIANPGTLDI-LASTNSAGDYTLTNALKGDGLMRVQLSSSD 35
           +   G   VTI  P T +     T S GD+    AL+GD L    + + D
Sbjct: 259 IISRGQVRVTIKQPDTPEEKYIRTLSKGDFFGEKALQGDDLRTANIIADD 308


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 142 PGTLDILASTNSAGDYTLTNAL 77
           P T  ++AS+ SAG+  L N+L
Sbjct: 592 PNTCKVIASSVSAGEEGLGNSL 613


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 417 IRHLPPPHREQHQCLA 464
           I HL P H   + C+A
Sbjct: 672 IEHLSPDHNGNYSCVA 687


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 408 NATKVEFGLGEGVFVFNHTNNSDAGYQVD 322
           NATK++FGL        H N  +  + VD
Sbjct: 58  NATKIDFGLS-----IQHYNVDEYSHTVD 81


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 253 GNTYSGKTLVNDGL 212
           GNT+  +T VND L
Sbjct: 87  GNTFKTETQVNDSL 100


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 253 GNTYSGKTLVNDGL 212
           GNT+  +T VND L
Sbjct: 89  GNTFKTETQVNDSL 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,111
Number of Sequences: 438
Number of extensions: 3405
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)