Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0188
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27690.1 68418.m03321 heavy-metal-associated domain-containin...    29   1.4  
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f...    29   1.4  
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f...    29   1.4  
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f...    29   1.4  
At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identi...    28   3.3  
At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHRO...    28   3.3  
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    27   5.8  
At5g18260.1 68418.m02146 expressed protein                             27   7.7  
At3g46270.1 68416.m05008 receptor protein kinase-related contain...    27   7.7  
At2g24880.1 68415.m02975 self-incompatibility protein-related lo...    27   7.7  
At1g74540.1 68414.m08636 cytochrome P450, putative similar to cy...    27   7.7  

>At5g27690.1 68418.m03321 heavy-metal-associated domain-containing
           protein very low similarity to copper homeostasis factor
           from Arabidopsis thaliana [gi:3168840]; contains Pfam
           heavy metal associated domain PF00403
          Length = 352

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = +3

Query: 417 IRHLPPPHREQHQCLAFLQQGSKTPK*TSPPRH 515
           I H PPPH   HQ     QQ    P   SPPRH
Sbjct: 223 IIHGPPPHLHHHQ-----QQNHPYPTVHSPPRH 250


>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 910

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 128 VERTGVCNGYFTRPHA--RYPICRMRRNGQE 214
           +ER  +C G++TR ++   YP+C M  +G++
Sbjct: 129 IERKLICQGFYTRSYSVEVYPLCLMLTDGRD 159


>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 910

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 128 VERTGVCNGYFTRPHA--RYPICRMRRNGQE 214
           +ER  +C G++TR ++   YP+C M  +G++
Sbjct: 129 IERKLICQGFYTRSYSVEVYPLCLMLTDGRD 159


>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 923

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 128 VERTGVCNGYFTRPHA--RYPICRMRRNGQE 214
           +ER  +C G++TR ++   YP+C M  +G++
Sbjct: 129 IERKLICQGFYTRSYSVEVYPLCLMLTDGRD 159


>At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identical
           to gi:1742956
          Length = 779

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 112 SLMRECRAYRGLQWLLHSTPCPL 180
           S++  C A+ GL WL   TPCP+
Sbjct: 387 SILSSCCAF-GLPWLSQCTPCPI 408


>At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHROME
           P450 71B1 - Thlaspi arvense, EMBL:L24438
          Length = 496

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 393 EFGLGEGVFVFNHTNNSDAGYQVDMLITGDDKDGKVI 283
           E GLGE  F  NHT     G  +D+L+ G D  G  I
Sbjct: 274 EIGLGEFQFTRNHTK----GILLDILLAGVDTSGHTI 306


>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = +2

Query: 152 GYFTRPHARYPICRMRRNGQEAVIDQRFTAISIPSLNTVWPASWITFPSLSSPVISISTW 331
           G+  R  AR   C+  +  +   +  R         NT++   W T P  +    +++  
Sbjct: 469 GFVERAFAR---CKDDKEKESCEVALRKIVKKAKEDNTLYTRDWDTEPLSTVTTTNVTNS 525

Query: 332 *PASLLLV*LKTKTPSPRPNSTFVALV 412
             +S  L  L+ K+P+ RP S +  LV
Sbjct: 526 ESSSAQLSSLQNKSPTRRPKSRWEPLV 552


>At5g18260.1 68418.m02146 expressed protein
          Length = 320

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 125 NVERTGVCNGYFTRPHARYPICRMRRNGQEAVIDQRFTAIS 247
           N ++T + N   TRP++  P C    NG     D+  TAIS
Sbjct: 41  NEQKTSLVNNSLTRPNSSNPQCLNEENG----FDRDSTAIS 77


>At3g46270.1 68416.m05008 receptor protein kinase-related contains
           weak similarity to light repressible receptor protein
           kinase (GI:1321686) [Arabidopsis thaliana]
          Length = 470

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 247 TYSGKTLVNDGLLTIASHTADGVTGMGSSEVTIANPG-TLDILASTNSAGDYTLTNALKG 71
           TY  K L++  L       +   +G  ++   ++    ++DI  ++N   +  ++ AL G
Sbjct: 199 TYGAKKLISYPLDPFGRLWSPSASGDNTALTDLSTSAPSIDITGASNKPPEIVMSKALSG 258

Query: 70  DGLM 59
           DGL+
Sbjct: 259 DGLI 262


>At2g24880.1 68415.m02975 self-incompatibility protein-related low
           similarity to self-incompatibility from [Papaver
           nudicaule] GI:3097262, [Papaver rhoeas] GI:3097260
          Length = 102

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 109 SAGDYTLTNALKGDGLMRVQLSSSDKMFG 23
           S+  + +TN LK + L+R+   S D +FG
Sbjct: 20  SSSGFKITNELKSNKLLRIGCYSKDDIFG 48


>At1g74540.1 68414.m08636 cytochrome P450, putative similar to
           cytochrome P450 GB:O48922 [Glycine max]; contains Pfam
           profile: PF00067 cytochrome P450
          Length = 497

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 157 LH-STPCPLPHLPYETQWSGG 216
           LH STP  LPH   ET W GG
Sbjct: 353 LHPSTPLMLPHKASETVWVGG 373


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,201,737
Number of Sequences: 28952
Number of extensions: 262022
Number of successful extensions: 577
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)