Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0185
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 46 2e-06
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 27 2.0
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 27 2.0
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 26 3.5
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 25 6.1
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 6.1
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 25 8.1
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 8.1
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 8.1
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 25 8.1
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 25 8.1
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 46.4 bits (105), Expect = 2e-06
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +3
Query: 15 MDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERI 128
+DRS I HLL+ ATDPFNR PL+ D + P L+E I
Sbjct: 957 IDRSTIKAHLLSDATDPFNRTPLTLDDVTPNDTLREEI 994
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 115 SSVAGRSWSSERGCRLKGSVALFS 44
++V+GRSWS C L SVA FS
Sbjct: 256 ATVSGRSWSWVFMCALNSSVAGFS 279
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 2.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 82 SPRTNYVQRLNSKKESNNGSARKNQRNRPKPRLKSDVHNITHI 210
SP N QRL+ S + + N P PR++S VH HI
Sbjct: 39 SPPRNPPQRLHPVDFSEHADT-DDDMNHPLPRVQSPVHIKNHI 80
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 106 RLNSKKESNNGSARKNQRNRPKPRLKSDVHNITHIKTNDRCKS 234
RLN+K+ + AR N+R+ P +++ V+ + +D CK+
Sbjct: 194 RLNNKQLAVESFAR-NERDTGSPEVQAAVYTSRILALSDHCKN 235
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 49 TVPRTPSTDSLSPRTNYVQRLNSKKESNNGSARKNQRNRPKP 174
T P S + S +TN++ NS N GS + P P
Sbjct: 152 TPPVNGSNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPP 193
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 6.1
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 45 LNSATDPFNRQPLSEDQLRPATELK-ERIQQWQRE 146
L S FN Q D+LR LK ERIQQ + E
Sbjct: 166 LQSLVTNFNDQQDEVDELRERITLKEERIQQMRNE 200
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 127 ILSLSSVAGRSWSSERGCRLKGSVALF 47
ILS+ +++G W++ G RL V LF
Sbjct: 12 ILSIIAISGVWWNATLGTRLDQKVQLF 38
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 100 VQRLNSKKESNNGSARKNQRNRPKP 174
+ + KK+ NN +KN+R KP
Sbjct: 434 IDKKKKKKKKNNKKKKKNKRKNIKP 458
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +1
Query: 103 QRLNSKKESNNGSARKNQRNRPKPRLKSDVHNITHIKTNDRCKSAF 240
+++N +K +NN ++N+ + + SD+ + + K N+ K F
Sbjct: 147 RKINPQKGNNNNLLKENKSLKTTAKDLSDISSSSMKKANNSSKPLF 192
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 24.6 bits (51), Expect = 8.1
Identities = 8/36 (22%), Positives = 20/36 (55%)
Frame = -2
Query: 425 IQFGAIDINQLIQWTPCSRKATTIIYTKFCLTRSLV 318
+++ ++ +NQ++ WTP + + CL+ S +
Sbjct: 289 LEYISVVLNQILDWTPVELRHSIFFCCLRCLSSSRI 324
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 24.6 bits (51), Expect = 8.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 100 VQRLNSKKESNNGSARKNQRNRPKPRLKSDVHNIT 204
V + + +KE NG++ K + RP P VH +T
Sbjct: 97 VVKSDEEKEDPNGASSKTVKARPLP--AGSVHRVT 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,177
Number of Sequences: 5004
Number of extensions: 37361
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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