Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0185
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0147 + 17690840-17691687,17692328-17692532,17693048-176931... 58 4e-09
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 38 0.006
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354... 31 0.66
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 29 2.0
06_01_0016 + 184804-185025,185121-185237,185324-185737,185827-18... 28 4.6
08_01_0099 + 709377-709493,710055-710099,710482-710553,712413-71... 27 6.1
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 27 6.1
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 27 8.1
08_02_1039 - 23866743-23866862,23866985-23867266,23867868-238679... 27 8.1
03_06_0446 - 33985668-33985940,33986008-33986085,33986151-339862... 27 8.1
>03_04_0147 + 17690840-17691687,17692328-17692532,17693048-17693199,
17693306-17693597,17693807-17693962,17694561-17694764,
17694875-17694987,17695078-17695192,17695293-17695382,
17695463-17695666,17695764-17695859,17696094-17696216,
17696308-17696400,17696477-17696641,17697179-17697268,
17697356-17697520
Length = 1036
Score = 58.0 bits (134), Expect = 4e-09
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = +3
Query: 3 AREVMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQR 143
+R +DR VI+RHLL+ +TDPFNR L++D L P TELK RI+++ R
Sbjct: 965 SRVTIDRPVIVRHLLSDSTDPFNRSHLTQDMLIPDTELKSRIEEFIR 1011
>05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 18 DRSVILRHLLNSAT-DPFNRQPLSEDQLRPATELKERIQQW 137
+RS+IL HL DP R+PL E QL P +KE +Q +
Sbjct: 1349 ERSIILEHLCKVGNFDPVTREPLKEHQLVPNLAIKEAVQAY 1389
>07_03_1391 +
26234647-26235026,26235112-26235226,26235345-26235410,
26235519-26235607,26235717-26235807,26235917-26236063,
26236160-26236252,26236373-26236474,26236581-26237255
Length = 585
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 55 PRTPSTDSLSPRTNYVQRLNSKKESNN 135
P +PS+ S PR ++R+NSKKE+ +
Sbjct: 468 PSSPSSSSSVPREKILERINSKKEAKS 494
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = +1
Query: 118 KKESNNGSARKNQRNRPKPRLKSDVH-----NITHIKTNDRCKSAFGD 246
KK SN + + N P PR+ DVH +I H+ T F D
Sbjct: 223 KKHSNGTKRSRTESNFPSPRMLKDVHSHFQSSIQHVSTMVTAMELFKD 270
>06_01_0016 +
184804-185025,185121-185237,185324-185737,185827-186888
Length = 604
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 9 EVMDRSVILRHLLNS-ATDPFNRQPLSEDQLRPATELKERIQQW 137
+ +RS I + L + T P +QPLS L P LK I QW
Sbjct: 251 QTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQW 294
>08_01_0099 +
709377-709493,710055-710099,710482-710553,712413-712484,
712763-712839,713040-713169,713250-713360,713443-713568
Length = 249
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 18 DRSVILRHLLNSAT-DPFNRQPLSEDQLRPATELKERIQQWQRE 146
+R+VIL HL DP R+ L QL P +KE + + E
Sbjct: 198 ERAVILDHLHRVGKFDPVTRETLEPHQLVPNLAIKEAVHAFLSE 241
>04_03_0153 + 11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 27.5 bits (58), Expect = 6.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 166 DDYVDFFSRCHCWILSL 116
D ++D+ + C CWIL+L
Sbjct: 1007 DSFMDYITVCSCWILTL 1023
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 142 RCHCWILSLSSVAGRSWSSERGCRLKGSVAL--FSR 41
RCHC ++ S GR ER R KG V + FSR
Sbjct: 178 RCHCRTIACLSRHGREEEGERERRGKGQVIVEKFSR 213
>08_02_1039 -
23866743-23866862,23866985-23867266,23867868-23867966,
23868595-23868903
Length = 269
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 93 GPRREAVG*RGPWHCSVDDVRS 28
GPR + PW C+ DD+R+
Sbjct: 70 GPRTRLIAQNIPWDCTADDMRA 91
>03_06_0446 -
33985668-33985940,33986008-33986085,33986151-33986233,
33986709-33986766,33987677-33987933,33988140-33988413
Length = 340
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 75 QPLSEDQLRPATELKERIQQWQRE 146
QP++ED +RP L+ +Q ++RE
Sbjct: 185 QPITEDSIRPNLALRLAVQAFKRE 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,208,613
Number of Sequences: 37544
Number of extensions: 227030
Number of successful extensions: 584
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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