Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0185
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47794| Best HMM Match : U-box (HMM E-Value=1.2e-28)                 50   1e-06
SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.072
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)                   28   4.7  
SB_1159| Best HMM Match : 7tm_3 (HMM E-Value=1.4e-28)                  28   4.7  
SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)                     27   8.3  
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               27   8.3  

>SB_47794| Best HMM Match : U-box (HMM E-Value=1.2e-28)
          Length = 121

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 19/43 (44%), Positives = 30/43 (69%)
 Frame = +3

Query: 9   EVMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQW 137
           ++MD+ +I RHLL+  +DPFNR+ L+   L P  +LK  I++W
Sbjct: 57  KIMDKEIISRHLLSDQSDPFNRKHLTVSMLEPEEDLKAEIEEW 99


>SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 12  VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQ 134
           V +R +I +++  + TDP N +P+SEDQL    EL   + Q
Sbjct: 24  VFERRLIEKYIAENGTDPVNGEPMSEDQLIDVKELSHALYQ 64


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 33.9 bits (74), Expect = 0.072
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 461  HYGTRILIYVLFIQFGAIDINQLIQWTPCSRKATTIIYT 345
            +YG RILIY++      + IN L+ + P S  + TI+ T
Sbjct: 1418 YYGVRILIYIMMAFASLVGINCLVHFHPSSSSSHTIVDT 1456


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = +1

Query: 52   VPRTPSTD------SLSPRTNYVQRLNSKKESNNGSARKNQRNR 165
            + RTPS +      S+ P+ +  +R+N K+ SN GSA K +R R
Sbjct: 1651 ITRTPSEEGKILQRSIGPKIS--KRMNHKRRSNGGSAMKKKRPR 1692


>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1164

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 130 NNGSARKNQRNRPKPRLKSDVHNITHIKTNDRCKSAFGDYC 252
           + G     +R RP+PR+     +    K    C+ AFG YC
Sbjct: 417 DRGGLGPQRRKRPQPRIPPQRGSGGAGKRRRMCQDAFGRYC 457


>SB_1159| Best HMM Match : 7tm_3 (HMM E-Value=1.4e-28)
          Length = 562

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 265 RLSRACVLVRTIREYLNYTNERVRQNLVYIIVV 363
           RL   CVL+     Y NY + R+RQ+L  ++VV
Sbjct: 237 RLEIGCVLIENKEYYFNYYH-RLRQDLEDVVVV 268


>SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 352

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 100 VQRLNSKKESNNGSARKNQRNRPKPRLKSDVHNITHIKTNDRCKSAFGD 246
           +++    K +NNG  R+ ++NR + R K    + TH KT +  ++A  D
Sbjct: 88  IKKAKVSKVNNNG--RRKEKNRGQKRPKRCRPDTTHCKTINSTRNAVCD 134


>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 659

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 23  VGDLTSSTEQCHGPLQPTASLRGPTTSS 106
           VGD TS+  Q   P+ PT S +  T+S+
Sbjct: 189 VGDTTSTKPQTSSPIGPTTSTQHQTSSA 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,599
Number of Sequences: 59808
Number of extensions: 285270
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)