Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0185
(489 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093696-1|AAH93696.1| 1173|Homo sapiens ubiquitination factor E... 73 4e-13
AL590639-5|CAI14687.1| 1173|Homo sapiens ubiquitination factor E... 73 4e-13
AL590639-4|CAI14688.1| 1302|Homo sapiens ubiquitination factor E... 73 4e-13
AL096841-2|CAI21860.1| 1173|Homo sapiens ubiquitination factor E... 73 4e-13
AL096841-1|CAI21859.1| 1302|Homo sapiens ubiquitination factor E... 73 4e-13
AF331520-1|AAK69622.1| 1173|Homo sapiens ubiquitin-fusion degrad... 73 4e-13
AF091093-1|AAC72962.1| 186|Homo sapiens unknown protein. 73 4e-13
AF043117-1|AAD02233.1| 1302|Homo sapiens ubiquitin-fusion degrad... 73 4e-13
AB028839-1|BAB40446.1| 1173|Homo sapiens homzygously deleted in ... 73 4e-13
AB014584-1|BAA31659.3| 1218|Homo sapiens KIAA0684 protein protein. 73 4e-13
D50916-1|BAA09475.2| 1075|Homo sapiens KIAA0126 protein. 69 9e-12
BC112367-1|AAI12368.1| 1066|Homo sapiens UBE4A protein protein. 69 9e-12
BC111417-1|AAI11418.1| 1066|Homo sapiens UBE4A protein protein. 69 9e-12
BC018698-1|AAH18698.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 36 0.100
BC018665-1|AAH18665.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 36 0.100
BC008719-1|AAH08719.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 36 0.100
AJ131186-1|CAB51857.1| 504|Homo sapiens nuclear matrix protein ... 36 0.100
>BC093696-1|AAH93696.1| 1173|Homo sapiens ubiquitination factor E4B
protein.
Length = 1173
Score = 73.3 bits (172), Expect = 4e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 12 VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+MDRS+ILRHLLNS TDPFNRQ L+E L P ELKE+IQ W RE
Sbjct: 1123 IMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 1167
>AL590639-5|CAI14687.1| 1173|Homo sapiens ubiquitination factor E4B
(UFD2 homolog, yeast) protein.
Length = 1173
Score = 73.3 bits (172), Expect = 4e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 12 VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+MDRS+ILRHLLNS TDPFNRQ L+E L P ELKE+IQ W RE
Sbjct: 1123 IMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 1167
>AL590639-4|CAI14688.1| 1302|Homo sapiens ubiquitination factor E4B
(UFD2 homolog, yeast) protein.
Length = 1302
Score = 73.3 bits (172), Expect = 4e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 12 VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+MDRS+ILRHLLNS TDPFNRQ L+E L P ELKE+IQ W RE
Sbjct: 1252 IMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 1296
>AL096841-2|CAI21860.1| 1173|Homo sapiens ubiquitination factor E4B
(UFD2 homolog, yeast) protein.
Length = 1173
Score = 73.3 bits (172), Expect = 4e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 12 VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+MDRS+ILRHLLNS TDPFNRQ L+E L P ELKE+IQ W RE
Sbjct: 1123 IMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 1167
>AL096841-1|CAI21859.1| 1302|Homo sapiens ubiquitination factor E4B
(UFD2 homolog, yeast) protein.
Length = 1302
Score = 73.3 bits (172), Expect = 4e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 12 VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+MDRS+ILRHLLNS TDPFNRQ L+E L P ELKE+IQ W RE
Sbjct: 1252 IMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 1296
>AF331520-1|AAK69622.1| 1173|Homo sapiens ubiquitin-fusion degradation
protein 2 protein.
Length = 1173
Score = 73.3 bits (172), Expect = 4e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 12 VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+MDRS+ILRHLLNS TDPFNRQ L+E L P ELKE+IQ W RE
Sbjct: 1123 IMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 1167
>AF091093-1|AAC72962.1| 186|Homo sapiens unknown protein.
Length = 186
Score = 73.3 bits (172), Expect = 4e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 12 VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+MDRS+ILRHLLNS TDPFNRQ L+E L P ELKE+IQ W RE
Sbjct: 136 IMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 180
>AF043117-1|AAD02233.1| 1302|Homo sapiens ubiquitin-fusion degradation
protein 2 protein.
Length = 1302
Score = 73.3 bits (172), Expect = 4e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 12 VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+MDRS+ILRHLLNS TDPFNRQ L+E L P ELKE+IQ W RE
Sbjct: 1252 IMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 1296
>AB028839-1|BAB40446.1| 1173|Homo sapiens homzygously deleted in
neuroblastoma-1/UFD2 protein.
Length = 1173
Score = 73.3 bits (172), Expect = 4e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 12 VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+MDRS+ILRHLLNS TDPFNRQ L+E L P ELKE+IQ W RE
Sbjct: 1123 IMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 1167
>AB014584-1|BAA31659.3| 1218|Homo sapiens KIAA0684 protein protein.
Length = 1218
Score = 73.3 bits (172), Expect = 4e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 12 VMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+MDRS+ILRHLLNS TDPFNRQ L+E L P ELKE+IQ W RE
Sbjct: 1168 IMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 1212
>D50916-1|BAA09475.2| 1075|Homo sapiens KIAA0126 protein.
Length = 1075
Score = 68.9 bits (161), Expect = 9e-12
Identities = 30/48 (62%), Positives = 37/48 (77%)
Frame = +3
Query: 3 AREVMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+R +DRS I RHLL+ TDPFNR PL+ DQ+RP TELKE+IQ+W E
Sbjct: 1019 SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 1066
>BC112367-1|AAI12368.1| 1066|Homo sapiens UBE4A protein protein.
Length = 1066
Score = 68.9 bits (161), Expect = 9e-12
Identities = 30/48 (62%), Positives = 37/48 (77%)
Frame = +3
Query: 3 AREVMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+R +DRS I RHLL+ TDPFNR PL+ DQ+RP TELKE+IQ+W E
Sbjct: 1010 SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 1057
>BC111417-1|AAI11418.1| 1066|Homo sapiens UBE4A protein protein.
Length = 1066
Score = 68.9 bits (161), Expect = 9e-12
Identities = 30/48 (62%), Positives = 37/48 (77%)
Frame = +3
Query: 3 AREVMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQWQRE 146
+R +DRS I RHLL+ TDPFNR PL+ DQ+RP TELKE+IQ+W E
Sbjct: 1010 SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE 1057
>BC018698-1|AAH18698.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 35.5 bits (78), Expect = 0.100
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 3 AREVMDRSVILRHLLNSATDPFNRQPLSEDQL 98
+ V +R +I +++ + TDP N QPLSE+QL
Sbjct: 21 SNHVYERRLIEKYIAENGTDPINNQPLSEEQL 52
>BC018665-1|AAH18665.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 35.5 bits (78), Expect = 0.100
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 3 AREVMDRSVILRHLLNSATDPFNRQPLSEDQL 98
+ V +R +I +++ + TDP N QPLSE+QL
Sbjct: 21 SNHVYERRLIEKYIAENGTDPINNQPLSEEQL 52
>BC008719-1|AAH08719.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 35.5 bits (78), Expect = 0.100
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 3 AREVMDRSVILRHLLNSATDPFNRQPLSEDQL 98
+ V +R +I +++ + TDP N QPLSE+QL
Sbjct: 21 SNHVYERRLIEKYIAENGTDPINNQPLSEEQL 52
>AJ131186-1|CAB51857.1| 504|Homo sapiens nuclear matrix protein
NMP200 protein.
Length = 504
Score = 35.5 bits (78), Expect = 0.100
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 3 AREVMDRSVILRHLLNSATDPFNRQPLSEDQL 98
+ V +R +I +++ + TDP N QPLSE+QL
Sbjct: 21 SNHVYERRLIEKYIAENGTDPINNQPLSEEQL 52
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,182,820
Number of Sequences: 237096
Number of extensions: 1259218
Number of successful extensions: 2608
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2608
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -