Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0185
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15400.1 68418.m01802 U-box domain-containing protein contain...    45   2e-05
At3g19380.1 68416.m02458 U-box domain-containing protein contain...    29   2.2  
At3g56720.1 68416.m06309 expressed protein                             28   2.9  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   5.1  
At5g41020.1 68418.m04986 myb family transcription factor contain...    27   6.8  
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar...    27   6.8  

>At5g15400.1 68418.m01802 U-box domain-containing protein contains
            Pfam profile PF04564: U-box domain
          Length = 1038

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = +3

Query: 3    AREVMDRSVILRHLLNSATDPFNRQPLSEDQLRPATELKERIQQW 137
            +R  +DR +I RHLL+   DPFNR  L+ D L P  ELK +I ++
Sbjct: 963  SRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEF 1007


>At3g19380.1 68416.m02458 U-box domain-containing protein contains
           similarity to immediate-early fungal elicitor protein
           CMPG1 GI:14582200 [Petroselinum crispum]; contains Pfam
           profile PF04564: U-box domain
          Length = 421

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 48  NSATDPFNRQPLSEDQLRPATELKERIQQW 137
           N+ T P  R PLS+  L P   L+  IQ+W
Sbjct: 52  NNTTCPVTRAPLSDFTLIPNHTLRRLIQEW 81


>At3g56720.1 68416.m06309 expressed protein 
          Length = 386

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +1

Query: 49  TVPRTPSTDSLSPRTNYVQRLNSKKESNNGSARKNQRNRPKPRLKSDVHNITHIKTNDRC 228
           T  R PS D  S +       +    S++GS  +NQ   PK   K       H++  DR 
Sbjct: 18  TAFRKPSNDGTSRKYRRRALADDGSSSSDGSPERNQSPNPKHSRKDS--EPVHVRKEDRW 75

Query: 229 KS 234
           +S
Sbjct: 76  ES 77


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +1

Query: 124 ESNNGSARKNQRNRPKPRLKSDVHNITHIKTNDRCKSAFGDYCPA*LRLSRACVLVRTIR 303
           +  NG   K  R+RP+   ++D  N    +  D      GD   + LR SR+  + +T  
Sbjct: 166 KETNGMDAKPSRDRPEDGRRADEKNGVKERRRDLIPPRRGDASRSPLRGSRSRSISKTNS 225

Query: 304 EYLNYTNER 330
              +Y+ ER
Sbjct: 226 GSKSYSGER 234


>At5g41020.1 68418.m04986 myb family transcription factor contains
           Pfam profile: PF00249 Myb DNA binding domain
          Length = 588

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 124 ESNNGSARKNQRNRPKPRLKSDVHNITHIKTND 222
           E N     K + N+ KP + SDV +I    TND
Sbjct: 177 EENIDKEVKRKNNKKKPSVDSDVEDINLDSTND 209


>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
           RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 798

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 11  GNGQVGDLTSSTEQCHGPLQPTASLR 88
           GN   G+ T+ ++Q HGP+ P   ++
Sbjct: 79  GNPDSGEKTAKSKQSHGPMSPKEHIK 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,987,566
Number of Sequences: 28952
Number of extensions: 189609
Number of successful extensions: 511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)