Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0184
         (517 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CCA5A Cluster: hypothetical protein TTHERM_0028...    34   2.2  
UniRef50_A0BRV6 Cluster: Chromosome undetermined scaffold_123, w...    32   6.8  

>UniRef50_UPI00006CCA5A Cluster: hypothetical protein
           TTHERM_00283350; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00283350 - Tetrahymena
           thermophila SB210
          Length = 868

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = -3

Query: 281 PKNLYTSXFFEISYAKLKMLHYDWSIKAKF*YKFN-SLCSNNYFEETVSV*KGSRIHKII 105
           PK  +   +  +    LK+   + S+K KF   ++ ++CSNN    TV+V + S+  ++ 
Sbjct: 306 PKEQFNPDYKNVQQL-LKVTSNEKSLKMKFNEDYSINICSNNNNTHTVAVPEKSQEERVT 364

Query: 104 TCAH*THHTDY 72
            C+  T++T Y
Sbjct: 365 VCSQQTNNTTY 375


>UniRef50_A0BRV6 Cluster: Chromosome undetermined scaffold_123,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_123,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 223

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 110 FCGFWTLF-IRSPSPQNNYYCIMN*ICIKILLLLTSHSEAFLALH 241
           F G+   + I++  PQ  YY I+  +CI+ILL+   H+    + H
Sbjct: 139 FLGYQLAYLIKTKQPQEKYYGILIVLCIQILLIFEPHTHIDYSAH 183


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 427,100,718
Number of Sequences: 1657284
Number of extensions: 7329565
Number of successful extensions: 12375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12372
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)