Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0184
         (517 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.1  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   4.9  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   8.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 482 VCLFIIIYIYNVVKCCYSNFIMWLLQIL 399
           VC++   Y++ +  C +  F M LL +L
Sbjct: 256 VCIYYFYYMHLLFCCAFIIFTMHLLFLL 283



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 479 CLFIIIYIYNVVKCCYSNFIMWLLQIL 399
           C FII  ++ +  C +  F M LL +L
Sbjct: 171 CAFIIFTMHLLFCCAFIFFNMHLLFLL 197


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 274 FLGFLSSIIVRK*LHGLLSCCSVGHSTKTV 363
           FL     +I+   ++GLLS    G STK +
Sbjct: 290 FLCLYLFLIITLTIYGLLSQLQAGFSTKDI 319


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 476 LFIIIYIYNVVKCCYSNFIMW 414
           +FI++ I+ +     SN IMW
Sbjct: 246 IFIVVSIFYMSAYLISNPIMW 266


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,480
Number of Sequences: 336
Number of extensions: 2170
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)