Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0184
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    28   0.95 
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    27   1.3  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   5.1  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +3

Query: 87  SLVCTCDYFVD--SGPFLYAHR---LLKXXXXXXXXKFVLKFCF 203
           +++C C+YF+D  +GPFL +++   +L         + VLKF +
Sbjct: 322 AIMCRCEYFLDMLAGPFLESNQELPVLSLPFSSSVVEIVLKFLY 365


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 359 VFVLCPTEQQLSSP*SYLRTMMLDKKPKNLYTSXFFEISYA 237
           +F LCP    +S P +Y+ +   +  P++ +     EI+Y+
Sbjct: 244 IFQLCPNATTISIPANYITSTAFESIPESGHNVRSLEITYS 284


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 248 ISYAKLKMLHYDWSIKAKF*YKFN 177
           ISY +L +LH   ++K +F + FN
Sbjct: 255 ISYLRLSLLHCKEALKTRFDFGFN 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,205
Number of Sequences: 5004
Number of extensions: 34339
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)