Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0184
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_56566| Best HMM Match : Ank (HMM E-Value=0)                         29   2.3  
SB_20515| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_9646| Best HMM Match : MrpF_PhaF (HMM E-Value=9.1)                  27   9.2  

>SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 470 IIIYIYNVVKCCYSNFIMWLLQIL 399
           ++++++N  +CCY     WLL++L
Sbjct: 300 LVVFMFNPFRCCYFKARFWLLKVL 323


>SB_56566| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1225

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 316 HGLLSCCSVGHSTKTV*LHDCFLY*CLKRICNNHIMKLL*QHFTTLYIYIIINKHTSKGL 495
           HG   C +V H+TK   LHDC       R  NN I+  L    +   I   +N+ +S GL
Sbjct: 161 HGA-DCTAVTHTTKETPLHDC------ARSGNNDILGALLGAMSQRKIQAAVNRRSSIGL 213


>SB_20515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 491 PLDVCLFIIIYIYNVVKCCYSNFIMWLLQILFKHQYKKQS*SYTVFVLCPTE 336
           PLD+ L +I  I   V    ++ + W   I+ KH+  K + +Y +  L  ++
Sbjct: 24  PLDIALVVIFSILAAVNVVSNSLVCW---IVLKHRQMKTAMNYLLINLAVSD 72


>SB_9646| Best HMM Match : MrpF_PhaF (HMM E-Value=9.1)
          Length = 126

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 491 PLDVCLFIIIYIYNVVKCCYSNFIMWLLQILFKHQYKKQS*SYTVFVLCPTE 336
           PLD+ L +I  I   V    ++ + W   I+ KH+  K + +Y +  L  ++
Sbjct: 50  PLDIALVVIFSILAAVNVVSNSLVCW---IVLKHRQMKTAMNYLLINLAVSD 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,608,748
Number of Sequences: 59808
Number of extensions: 238764
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)