Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0184
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical
           protein F53F1.8 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 470 IIIYIYNVVKCCYSNFIMWLLQILFK 393
           I  ++YN++   YS F  W+L I+ K
Sbjct: 275 IFYFLYNILCVIYSTFSAWMLLIISK 300


>Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 413 LLQILFKHQYKKQS*SYTVFVLCPTEQQLSS 321
           ++Q+LF H +++ S   T+  LCPT ++ SS
Sbjct: 16  VVQLLFAHGHRQLSIGETIENLCPTCEKTSS 46


>Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 413 LLQILFKHQYKKQS*SYTVFVLCPTEQQLSS 321
           ++Q+LF H +++ S   T+  LCPT ++ SS
Sbjct: 16  VVQLLFAHGHRQLSIGETIENLCPTCEKTSS 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,334,101
Number of Sequences: 27780
Number of extensions: 191015
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)