Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0184
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12530.1 68414.m01451 hypothetical protein ; expression suppo...    29   2.5  
At1g32660.1 68414.m04028 F-box family protein contains Pfam prof...    28   3.2  
At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putati...    28   4.3  
At1g73740.1 68414.m08538 glycosyl transferase family 28 protein ...    27   7.5  

>At1g12530.1 68414.m01451 hypothetical protein ; expression
           supported by MPSS
          Length = 192

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 138 RIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIE 13
           R+K  ++ +NN +  +  S  L+RH   N+KT + S   F E
Sbjct: 32  RLKENEDLRNNMISVVKESTSLKRHGAQNMKTRQLSDAIFEE 73


>At1g32660.1 68414.m04028 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 446

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 437 CYSNFIMWLLQILFKHQYKKQS 372
           C S+F+ W+L+   KH++ +QS
Sbjct: 322 CISSFVFWILEDPKKHEWSRQS 343


>At4g15370.1 68417.m02349 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]
          Length = 759

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 116 GFWTLFIRSPSPQNNYYC-IMN*ICIKILLLLTSHSE 223
           G W L + SPS   N +C ++N IC++IL +   H +
Sbjct: 164 GGWGLHVESPS---NMFCSVINYICLRILGVEAGHDD 197


>At1g73740.1 68414.m08538 glycosyl transferase family 28 protein
           similar to
           UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)-
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase GB:O07670 [SP|O07670] from Enterococcus
           hirae, ]SP|O07109] from Enterococcus faecalis; contains
           Pfam profile PF04101: Glycosyltransferase family 28
           C-terminal domain
          Length = 431

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 400 FSSISTRNNHEAIPFLCYVQ-LNNSLAVREVTYVQ*CLIRSLKISIL 263
           FS+IST  +  + PFLC+   L   L + + T+    ++R LK  I+
Sbjct: 106 FSTISTVGSSSSRPFLCFTSFLKFPLRLIQSTFESYKILRELKPQIV 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,361,619
Number of Sequences: 28952
Number of extensions: 164114
Number of successful extensions: 274
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)