Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0183
         (523 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17DE2 Cluster: Vacuolar protein sorting 18; n=2; Culic...    33   4.0  

>UniRef50_Q17DE2 Cluster: Vacuolar protein sorting 18; n=2;
           Culicidae|Rep: Vacuolar protein sorting 18 - Aedes
           aegypti (Yellowfever mosquito)
          Length = 978

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +2

Query: 50  LL*DFHRIVLYSYNYLLFILTNICILFARLFVELFSKLC*SCLSI-DVVSQPFTT*LILK 226
           +L DFH I+LY  +     L N  +++   FVE + KLC     +   V+  ++  +I +
Sbjct: 353 VLTDFHAILLYVDHVTAISLLNYQVVYEEYFVEQYGKLCNVVRDVRSNVTYVYSNKMIFR 412

Query: 227 YSKIGHPSYPTF*LI*QKSKFQI 295
           Y KI +     + L  ++ K+ +
Sbjct: 413 Y-KINNEQRNAWRLYAERQKYDL 434


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,474,371
Number of Sequences: 1657284
Number of extensions: 7397782
Number of successful extensions: 15644
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15633
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)