Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0182
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17E02 Cluster: Putative uncharacterized protein; n=1; ...    35   1.3  
UniRef50_A5DIZ1 Cluster: Putative uncharacterized protein; n=1; ...    32   6.9  
UniRef50_A0CQ75 Cluster: Chromosome undetermined scaffold_24, wh...    32   9.2  

>UniRef50_Q17E02 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 484

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 204 YMCLCACYPFINANKIYLRLVTLKSNSNLRPNSSND 311
           ++CL  C    N N+ YL++  ++SN  +RP++ N+
Sbjct: 63  FVCLNCCQQLENFNRFYLQIKQIQSNRKMRPDAGNN 98


>UniRef50_A5DIZ1 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 362

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 37  WVPNFRGHY*VRLRYFSADLSKIFGWITGYFFNILILFCFLVYRNS 174
           W     G + V  +YF+  L K  GW+   F+ +++ FC   +  S
Sbjct: 42  WHSLSHGFHQVNNQYFNGRLEKYLGWLVPSFYIVVVTFCIFHFFKS 87


>UniRef50_A0CQ75 Cluster: Chromosome undetermined scaffold_24, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_24, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 3035

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +3

Query: 234  INANKIYLRLVTLKSNSNLRPNSSNDLFSCLYQFAYLPRLTILYDA---TILISSTGINN 404
            IN+ K+ +R + +  NS   P + +  F C+ QFA L     +Y      + I    + N
Sbjct: 1479 INSEKLEMRNLIISQNSKFLPKALHSSFECVKQFAILNMHFFIYIGQYKDVFIDQVNVQN 1538

Query: 405  DL 410
             L
Sbjct: 1539 SL 1540


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,895,054
Number of Sequences: 1657284
Number of extensions: 9531152
Number of successful extensions: 17066
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17066
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)