Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0182
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    27   2.2  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   3.0  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   3.0  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    26   3.9  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   9.0  

>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 214 RHIYLPIYLEINRRNSYKLK 155
           R +Y+PI L+I   N+Y+LK
Sbjct: 114 RDVYIPIRLDIELPNNYRLK 133


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +3

Query: 177 RLISR*IGKYMCLCACYPFINANKIYLR-----LVTLKSNSNLRPNSS 305
           RLI    GK  CL +  P +   K+ LR     L T + +S L PN S
Sbjct: 452 RLIENIGGKICCLISSLPNVGVGKLELREDPKLLGTNRESSLLHPNDS 499


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 91   DLSKIFGWITGYFFNILILF-CFLVYRNSDG*SQGKLAN 204
            +L + + WIT  F++ L+LF C +     DG ++  LA+
Sbjct: 1045 NLKRFWSWITNGFYHSLLLFLCSIAVFYYDGPNKDGLAS 1083


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 84  KITQTHLIMTPEIWHPLPPVS 22
           K T  HLI  P    PLPP+S
Sbjct: 169 KTTANHLIQIPAKGTPLPPIS 189


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 279 NSNLRPNSSNDLFSCLYQFAYLPRLTILYDATIL 380
           NSN+    +NDL   ++   +   L +LY  ++L
Sbjct: 182 NSNILRIEANDLIEKIFSILFSDSLNVLYITSVL 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,201
Number of Sequences: 5004
Number of extensions: 43559
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)