Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0182
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962...    29   1.7  
02_05_0944 + 32980540-32980788,32980873-32981283,32981383-329814...    29   1.7  
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314           29   2.3  

>11_03_0073 -
           9621199-9621312,9621401-9621476,9621553-9621619,
           9621655-9621751,9621898-9621996,9622348-9622358,
           9622716-9622784,9622871-9623195,9623287-9623457,
           9623538-9623713,9624173-9624414,9624481-9624542,
           9625305-9625340,9626103-9626262,9626372-9626606,
           9626694-9626949,9627062-9627176,9628388-9628450,
           9628592-9629325
          Length = 1035

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 272 QGYKPKINFIGVYKRIAGT*THIFANLP*DQPSEFL*TKKQNRMRILKKYPV 117
           +  +PKI   G+ K   GT THI  + P   P  ++  +  N++ I  KY V
Sbjct: 437 ENMEPKIADFGISKHFTGTKTHITISKPTGTP-RYMPPEYLNKLVISNKYDV 487


>02_05_0944 +
           32980540-32980788,32980873-32981283,32981383-32981460,
           32981551-32982318
          Length = 501

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 268 P*NLIQISDQTPAMTCSVVCTNLLIYPG*PFYMTRPFSYRQLESTTTLFQVIKT 429
           P  L QI+D+TP    +      +      F   +P+S R L     LFQ  KT
Sbjct: 174 PRTLYQINDKTPGSEIAAETAAAMTASSMVFRKDKPYSRRLLNKAKLLFQFAKT 227


>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
          Length = 1056

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 73  LRYFSADLSKIFGWITGYFFNILILFCFLVYRN 171
           LRYF A  +++ G I   F NI +L  F+++RN
Sbjct: 280 LRYFIAFYNRLEGQIPASFSNISVLEKFILHRN 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,828
Number of Sequences: 37544
Number of extensions: 238462
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)