Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0182
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical ...    27   8.1  
AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical
           protein R09H10.4 protein.
          Length = 877

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  FSADLSKIFGWITGYFFNILILFCFLVY 165
           F+  L     W+   + ++L+LFCF+VY
Sbjct: 448 FTVMLDSYCDWVANAYTHLLVLFCFIVY 475


>Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical
           protein T28A8.2 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 40  VPNFRGHY*VRLRYFSADLSKIFGWITGY 126
           VPNFR     ++ +FS      FGW  GY
Sbjct: 249 VPNFRFFLFCKIFFFSKAAHSTFGWWMGY 277


>U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical
           protein C31H2.1b protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 491 YLCRITNCVLLSFHAFYKRFGVLIT--WNKV 405
           Y+CRI +C     H F  R  + I   W+KV
Sbjct: 337 YICRIVDCYFAEGHKFLIRSAISIVYIWSKV 367


>U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical
           protein C31H2.1a protein.
          Length = 696

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 491 YLCRITNCVLLSFHAFYKRFGVLIT--WNKV 405
           Y+CRI +C     H F  R  + I   W+KV
Sbjct: 394 YICRIVDCYFAEGHKFLIRSAISIVYIWSKV 424


>AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 500 SVIYLCRITNCVLLSFHAFYKRFGVLITWNKVV 402
           S+  LCR+T+C++ S   +Y  + + I   K +
Sbjct: 64  SICDLCRLTSCIIESLRFYYDSYQLSILAEKCI 96


>AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 500 SVIYLCRITNCVLLSFHAFYKRFGVLITWNKVV 402
           S+  LCR+T+C++ S   +Y  + + I   K +
Sbjct: 64  SICDLCRLTSCIIESLRFYYDSYQLSILAEKCI 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,573,699
Number of Sequences: 27780
Number of extensions: 234494
Number of successful extensions: 449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)