Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0179
         (519 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E4A2F2 Cluster: PREDICTED: similar to CDC91 cell...    34   2.2  
UniRef50_Q14P51 Cluster: Hypothetical transmembrane protein; n=1...    32   6.8  
UniRef50_Q8G525 Cluster: Possible transport protein; n=3; Bifido...    32   9.0  

>UniRef50_UPI0000E4A2F2 Cluster: PREDICTED: similar to CDC91 cell
           division cycle 91-like 1; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to CDC91 cell
           division cycle 91-like 1 - Strongylocentrotus purpuratus
          Length = 442

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 21/76 (27%), Positives = 43/76 (56%)
 Frame = -3

Query: 304 TKTMNFLFDGENYKQISYAI*IDKKKNVNTDSHIIMS*SCVRSLYKVIIPIYKLVTCINK 125
           T+TM +L++ + +++ SYA  +D    +++D  +I       ++Y ++ P Y +VTC+ +
Sbjct: 104 TRTMKYLYNLQKWEEKSYASGVDPLLILSSD--VISIPDLAMAIY-LLCP-YSIVTCVAQ 159

Query: 124 T*GIFRNFHIN*TFCF 77
              +F N  +  TF F
Sbjct: 160 CTVVFTNLTLAATFLF 175


>UniRef50_Q14P51 Cluster: Hypothetical transmembrane protein; n=1;
           Spiroplasma citri|Rep: Hypothetical transmembrane
           protein - Spiroplasma citri
          Length = 298

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 55  NCLSKNSKNKMFNLCENF*RFLMSYLYKSLVYI 153
           N LSKNS+N+  N   +F  FL   LY   VYI
Sbjct: 110 NTLSKNSQNRFINFYWDFHEFLAHNLYNENVYI 142


>UniRef50_Q8G525 Cluster: Possible transport protein; n=3;
           Bifidobacterium|Rep: Possible transport protein -
           Bifidobacterium longum
          Length = 439

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 361 SVIIELNNFSYGLIAETNWTKTMNFLFDGENYKQISYAI 245
           ++I+ L  FS+G +  T W+  +  + DGE     +YA+
Sbjct: 123 AIIMGLTQFSFGALVRTRWSYALRGVEDGEQLLNTAYAM 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,612,609
Number of Sequences: 1657284
Number of extensions: 8572840
Number of successful extensions: 14519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14517
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)