Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0179
         (519 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   8.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   8.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.7  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 343 NNFSYGLIAETNWTKTMN 290
           NN  +GL  E NW+   N
Sbjct: 8   NNPQFGLQLECNWSSGPN 25


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -3

Query: 85  FCFCYFS 65
           FC+CY+S
Sbjct: 553 FCYCYYS 559


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 176 TSHTTLTHNNMG 211
           T HTT +HN  G
Sbjct: 280 TRHTTTSHNTRG 291


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,177
Number of Sequences: 336
Number of extensions: 2521
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)