Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0179
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    27   2.2  
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    25   5.1  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   5.1  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   6.8  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   6.8  

>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +2

Query: 188 TLTHNNMGVGINIFLFVDLNSVRNLFVVFPVKEKVHS---FRPISLGY*TVTKII*LNNN 358
           TL  +    G+++ L  +L S +NL   F   +K  S     P ++     +K+   N+ 
Sbjct: 350 TLNDSQFAAGLSL-LASELESQKNLLKKFENLKKKSSKDFLSPSTILSNAFSKVSLPNSL 408

Query: 359 AARILEYSLLFIDSI*IF 412
             R+L +SLLFI  I IF
Sbjct: 409 ILRVLFFSLLFIIGIHIF 426


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 402 YKY-FYPKYKDSSVEL*GLKGKVYISPSRFRQLRRSTS 512
           YK+   P+ KD+ +E+  LKG   I P   R+L  S S
Sbjct: 401 YKFDITPEQKDALLEVVRLKGHYSIGPEIRRELLNSAS 438


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +2

Query: 176 TSHTTLTHNNMGVGINIFLFVDLNSVRNLFVVFPVKEKVHSFRPISLGY*TVTKII*LNN 355
           T+     H    +   +F +++ N   N+++  P  ++V   R ++L      + +  NN
Sbjct: 295 TNQVPEQHREEFMSDKVFKYINTN---NVWLYLPAVKRVVENRELNLDIMPNIETVYYNN 351

Query: 356 NAARILEYS 382
             ARI+E++
Sbjct: 352 EPARIIEFT 360


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 28  NLAGCVYGPNCLSK 69
           NLAGC YG +CL +
Sbjct: 313 NLAGCNYGRDCLDE 326


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 88  TFCFCYFSTNNLARRH 41
           +FCFCY+ +    +RH
Sbjct: 216 SFCFCYYGSERQFQRH 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,245
Number of Sequences: 5004
Number of extensions: 40860
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)