Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0179
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0728 + 5553506-5553954,5554749-5554836,5556945-5557199,555...    29   3.0  
01_06_0782 + 31969677-31969767,31969863-31969960,31970059-319702...    28   5.2  

>07_01_0728 +
           5553506-5553954,5554749-5554836,5556945-5557199,
           5557816-5557988,5558134-5558242
          Length = 357

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/42 (30%), Positives = 30/42 (71%)
 Frame = +2

Query: 185 TTLTHNNMGVGINIFLFVDLNSVRNLFVVFPVKEKVHSFRPI 310
           T +TH++  VG+ + L  +L+ V+++ V+F + ++V+ +RP+
Sbjct: 231 TGITHSHASVGVVVRLRKELSLVKDVPVLFAI-DQVNVYRPM 271


>01_06_0782 +
           31969677-31969767,31969863-31969960,31970059-31970235,
           31970367-31970467,31970626-31970701,31970827-31970886,
           31970979-31971215,31971612-31971686,31971981-31972039,
           31972110-31972201,31972463-31972623,31972964-31973176
          Length = 479

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 212 VGINIFLFVDLNSVRNLFVV 271
           VG++   F ++NS+RNLF+V
Sbjct: 358 VGLSFLQFTNMNSMRNLFIV 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,810,150
Number of Sequences: 37544
Number of extensions: 201364
Number of successful extensions: 254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)