Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0179
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07)         31   0.57 
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   30   1.00 
SB_36473| Best HMM Match : Xan_ur_permease (HMM E-Value=5.5e-05)       30   1.00 
SB_55833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_26902| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43)    28   5.3  

>SB_38880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +2

Query: 212 VGINIFLFVDLNSVRNLFVV 271
           VGI+   FVDLNS RNLFVV
Sbjct: 663 VGISNLQFVDLNSSRNLFVV 682


>SB_22037| Best HMM Match : Xan_ur_permease (HMM E-Value=2e-07)
          Length = 445

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 212 VGINIFLFVDLNSVRNLFVV 271
           VGI+   FVDLNS RNLF++
Sbjct: 282 VGISTLQFVDLNSSRNLFII 301


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 212 VGINIFLFVDLNSVRNLFVV 271
           VGI+   FVDLNS RNLF++
Sbjct: 14  VGISNLQFVDLNSSRNLFII 33


>SB_36473| Best HMM Match : Xan_ur_permease (HMM E-Value=5.5e-05)
          Length = 165

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 212 VGINIFLFVDLNSVRNLFVV 271
           VGI+   FVDLNS RNLF++
Sbjct: 134 VGISNLQFVDLNSSRNLFII 153


>SB_55833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 212 VGINIFLFVDLNSVRNLFV 268
           VGI+   FVD+NS RNLFV
Sbjct: 282 VGISNLQFVDMNSSRNLFV 300


>SB_26902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 212 VGINIFLFVDLNSVRNLFVV 271
           VGI+   F++LNS RNLF++
Sbjct: 14  VGISNLQFINLNSSRNLFII 33


>SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43)
          Length = 774

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 212 VGINIFLFVDLNSVRNLFVV 271
           VGI+   F++LNS RNLF++
Sbjct: 346 VGISNLQFINLNSSRNLFII 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,525,571
Number of Sequences: 59808
Number of extensions: 266917
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)