Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0179
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 67  STNNLARRHSPLGFSPTFSVGR 2
           ST    R H P  F P+F + R
Sbjct: 394 STPGTGREHDPAKFPPSFRISR 415


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 43  VYGPNCLSKNSKNKMFNLCENF*RFLMSYLYKSLVYI 153
           ++ P+C  KN+K   F+       +L  Y  K+L+Y+
Sbjct: 87  IWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYM 123


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 1   SAPLRRSGRNLAGCVYGPN 57
           ++PL+R G    G   GPN
Sbjct: 390 ASPLKREGGPPTGATTGPN 408


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 396 IPYKYFYPKYKDSSVEL*GLK 458
           I + +FYP    S  EL GLK
Sbjct: 348 IQHHFFYPDPLASKYELHGLK 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,472
Number of Sequences: 438
Number of extensions: 2774
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)