Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0179
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17120.1 68417.m02578 expressed protein                             30   1.1  
At2g34190.1 68415.m04184 xanthine/uracil permease family protein...    28   4.3  
At2g26510.1 68415.m03181 xanthine/uracil permease family protein...    28   4.3  
At1g35660.1 68414.m04432 expressed protein                             27   5.7  

>At4g17120.1 68417.m02578 expressed protein
          Length = 1661

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 358 VIIELNNFSYGLIAETNWT-KTMNFLFDGENY 266
           V + LNN S+GL+ +T++T  T+NF     +Y
Sbjct: 321 VNVSLNNISFGLLGKTDYTNSTINFSLAARSY 352


>At2g34190.1 68415.m04184 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 524

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 212 VGINIFLFVDLNSVRNLFVV 271
           VG++   F ++NS+RNLF+V
Sbjct: 403 VGLSFLQFTNMNSLRNLFIV 422


>At2g26510.1 68415.m03181 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 551

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 206 MGVGINIFLFVDLNSVRNLFVV 271
           + VGI+   F D NS+RN++V+
Sbjct: 425 VAVGISFIQFTDTNSMRNMYVI 446


>At1g35660.1 68414.m04432 expressed protein
          Length = 1155

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 331  YGLIAETNWTKTMNFLFDGENYKQISYAI*IDKKKNVNTDSH 206
            Y L+A+ NW K+M+F +  EN   +   I I++    +T S+
Sbjct: 1106 YALLADRNWQKSMDF-YGPENLPSMFLTILIERSALSSTVSN 1146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,314,882
Number of Sequences: 28952
Number of extensions: 190384
Number of successful extensions: 304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)