Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0178
         (525 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25809 Cluster: Rps3 protein; n=2; Plasmodium|Rep: Rps3...    31   0.45 
UniRef50_A0CQ34 Cluster: Chromosome undetermined scaffold_24, wh...    36   0.57 
UniRef50_Q4N273 Cluster: Putative uncharacterized protein; n=2; ...    33   4.0  
UniRef50_Q4N1R4 Cluster: Putative uncharacterized protein; n=2; ...    32   9.3  

>UniRef50_Q25809 Cluster: Rps3 protein; n=2; Plasmodium|Rep: Rps3
           protein - Plasmodium falciparum
          Length = 214

 Score = 30.7 bits (66), Expect(2) = 0.45
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 317 LYIYFYHIYRISYLFILLNF 258
           LY  +Y+IY + Y+FILLN+
Sbjct: 75  LYNKYYNIYNLKYIFILLNY 94



 Score = 24.6 bits (51), Expect(2) = 0.45
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 140 LGHRNVLYSTYYSSMNSLRTDFVSYNFNVN*HIVPIKIYTFHFSS 6
           L + N  Y  YY+ M  L+  +V+   N+N  +  IK Y   + S
Sbjct: 92  LNYFNYYYYNYYNYMCFLKIKYVNNINNINVIMYYIKKYYIKYKS 136


>UniRef50_A0CQ34 Cluster: Chromosome undetermined scaffold_24, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_24,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1563

 Score = 35.9 bits (79), Expect = 0.57
 Identities = 17/74 (22%), Positives = 41/74 (55%)
 Frame = -1

Query: 420 KYEIHK*HYSLTSRSVIMLLVIIRITNVLVEGIIVVYLLLSYLQNFISIYFVEF**RGSL 241
           ++   K H     +++I++L+ + +  + V+   ++YLL++ + ++  + +VE      +
Sbjct: 213 RFNQQKVHLVFAFQTMIVILIGLEVNTITVQVFYLIYLLMNVIMSYHQLVYVEV----QI 268

Query: 240 NQLQCFVSVIKLIY 199
           +QLQ  +S   LIY
Sbjct: 269 SQLQLHISSYLLIY 282


>UniRef50_Q4N273 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 577

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -2

Query: 137 GHRNVLYSTYYSSMNSL-RTDFVSYNFNVN*HIVPIKIYTFH 15
           G R++ Y++ Y S + L  +DF++ NFNV+   +P+ +Y +H
Sbjct: 286 GFRSMGYNSDYMSGDFLGASDFITNNFNVDPSRIPMNLYDYH 327


>UniRef50_Q4N1R4 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 3928

 Score = 31.9 bits (69), Expect = 9.3
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = -1

Query: 399 HYSLTSRSVIMLLVIIRITNVLVEGIIVVYLLLSYLQNFISIYFVEF**RGSLNQLQCFV 220
           +YS   +S   LL +  + NVL+E I+V Y LL  L N   +         ++N LQ F+
Sbjct: 411 YYSRNKQSNAYLLYVKTVLNVLIEIIVVNYKLLIQLTNIKRVI--------TINILQAFL 462

Query: 219 SVIKL 205
             +KL
Sbjct: 463 ITVKL 467


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 450,480,078
Number of Sequences: 1657284
Number of extensions: 8068225
Number of successful extensions: 14548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14545
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)