Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0178
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   2.3  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   3.0  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   6.9  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    25   9.1  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   9.1  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = +3

Query: 48  LIYIKIV*YKIGS**IHRTVVSRI*YITVSQIILGKTTPLQNELTPQIPISKLILSLIQN 227
           L Y K +   IG    HR  V     ++  ++IL K   LQ+  +      + ++ ++ N
Sbjct: 500 LNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEYYRSLVWILDN 559

Query: 228 TAVG*VNLSIKIQQN 272
              G ++L+  ++ N
Sbjct: 560 DITGVLDLTFSVEDN 574


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 158 CFAQNDLGHRNVLYSTYYSSMN 93
           C A++D+  R  L STYY+S++
Sbjct: 305 CIAESDIPIRQSLSSTYYNSLS 326


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 161 GCFAQNDLGHRNV-LYSTYYSSMNSLRTDFVSYNFNVN 51
           GC  + D+ + NV L++ Y        TDF  YN++ N
Sbjct: 427 GC-RREDIAYLNVPLHTVYCIEPQPYGTDFYQYNYDPN 463


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 360 VIIRITNVLVEGIIVVYLLLSYLQNFISI 274
           VII I  ++++G++  ++ L  L NFI++
Sbjct: 553 VIIAIILIIIQGLVFSFMALWSLWNFITM 581


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 71  IQNRFLVNS*NCSK*NIIHYGV-PNHFGQNNP 163
           ++N  L+N+ N SK N+I + V  N+   N+P
Sbjct: 112 LKNMELINTLNTSKGNVIAFAVHENYVAYNSP 143


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 116 NIIHYGVPNHFGQ 154
           NI H G+PNHF +
Sbjct: 407 NITHPGIPNHFAK 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,955
Number of Sequences: 5004
Number of extensions: 39227
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)