Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0178
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48716-6|CAH04739.1|  238|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z48716-5|CAA88598.2|  264|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z37140-5|CAA85499.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z37140-4|CAA85498.1|  308|Caenorhabditis elegans Hypothetical pr...    27   8.2  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       27   8.2  

>Z48716-6|CAH04739.1|  238|Caenorhabditis elegans Hypothetical
           protein F59B10.4b protein.
          Length = 238

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -3

Query: 238 PTAVFCISDKINLLMGI*GVSSFCKGVVLPKMIWDTVMYYILL 110
           P+ +F ++  + +L+ + G++S    ++LP ++W  V+   LL
Sbjct: 44  PSTLFIVNFSL-VLLALLGINSKVSSMILPALVWKCVLLLFLL 85


>Z48716-5|CAA88598.2|  264|Caenorhabditis elegans Hypothetical
           protein F59B10.4a protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -3

Query: 238 PTAVFCISDKINLLMGI*GVSSFCKGVVLPKMIWDTVMYYILL 110
           P+ +F ++  + +L+ + G++S    ++LP ++W  V+   LL
Sbjct: 70  PSTLFIVNFSL-VLLALLGINSKVSSMILPALVWKCVLLLFLL 111


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 126 ITVSQIILGKTTPLQNELTPQIPISKLILSLIQNTAVG 239
           I V+QI LG+T  + ++ TP    + LIL+LI+    G
Sbjct: 24  IAVTQIALGRTIGVIDKATPNDSNALLILNLIKEADDG 61


>Z37140-5|CAA85499.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK899.6 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 215 TDTKHCSWLSEPLYQNSTK*IDMKFCKYDKSKYTTMIPSTKTLVILIITS 364
           ++ K C    E   + +   I  K C   KS+Y+T I ++K L   ++TS
Sbjct: 88  SECKKCGMCMERFNEEAKVIIHSKQCTNYKSEYSTFIQNSKALFGNMLTS 137


>Z37140-4|CAA85498.1|  308|Caenorhabditis elegans Hypothetical
           protein ZK899.5 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 215 TDTKHCSWLSEPLYQNSTK*IDMKFCKYDKSKYTTMIPSTKTLVILIITS 364
           ++ K C    E   + +   I  K C   KS+Y+T I ++K L   ++TS
Sbjct: 88  SECKKCGMCMERFNEEAEVIIHSKQCTNYKSEYSTFIQNSKALFGNMLTS 137


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 126 ITVSQIILGKTTPLQNELTPQIPISKLILSLIQNTAVG 239
           I V+QI LG+T  + ++ TP    + LIL+LI+    G
Sbjct: 24  IAVTQIALGRTIGVIDKATPNDSNALLILNLIKEADDG 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,833,180
Number of Sequences: 27780
Number of extensions: 206407
Number of successful extensions: 386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)